Advances in single-cell RNA sequencing and its applications in cancer research

D Huang, N Ma, X Li, Y Gou, Y Duan, B Liu… - Journal of hematology & …, 2023 - Springer
Cancers are a group of heterogeneous diseases characterized by the acquisition of
functional capabilities during the transition from a normal to a neoplastic state. Powerful …

Single-cell transcriptomics in cancer: computational challenges and opportunities

J Fan, K Slowikowski, F Zhang - Experimental & Molecular Medicine, 2020 - nature.com
Intratumor heterogeneity is a common characteristic across diverse cancer types and
presents challenges to current standards of treatment. Advancements in high-throughput …

Repopulated microglia are solely derived from the proliferation of residual microglia after acute depletion

Y Huang, Z Xu, S Xiong, F Sun, G Qin, G Hu… - Nature …, 2018 - nature.com
Newborn microglia rapidly replenish the whole brain after selective elimination of most
microglia (> 99%) in adult mice. Previous studies reported that repopulated microglia were …

Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq

Z Xu, Y Wang, K Sheng, R Rosenthal, N Liu… - Nature …, 2023 - nature.com
Bacteria colonize almost all parts of the human body and can differ significantly. However,
the population level transcriptomics measurements can only describe the average bacteria …

RNA‐Seq methods for transcriptome analysis

R Hrdlickova, M Toloue, B Tian - Wiley Interdisciplinary …, 2017 - Wiley Online Library
Deep sequencing has been revolutionizing biology and medicine in recent years, providing
single base‐level precision for our understanding of nucleic acid sequences in high …

Design and computational analysis of single-cell RNA-sequencing experiments

R Bacher, C Kendziorski - Genome biology, 2016 - Springer
Single-cell RNA-sequencing (scRNA-seq) has emerged as a revolutionary tool that allows
us to address scientific questions that eluded examination just a few years ago. With the …

Single-cell RNA sequencing: technical advancements and biological applications

E Hedlund, Q Deng - Molecular aspects of medicine, 2018 - Elsevier
Cells are the basic building blocks of organisms and each cell is unique. Single-cell RNA
sequencing has emerged as an indispensable tool to dissect the cellular heterogeneity and …

Single-cell whole-genome amplification and sequencing: methodology and applications

L Huang, F Ma, A Chapman, S Lu… - Annual review of …, 2015 - annualreviews.org
We present a survey of single-cell whole-genome amplification (WGA) methods, including
degenerate oligonucleotide–primed polymerase chain reaction (DOP-PCR), multiple …

Effective detection of variation in single-cell transcriptomes using MATQ-seq

K Sheng, W Cao, Y Niu, Q Deng, C Zong - Nature methods, 2017 - nature.com
The quantification of transcriptional variation in single cells, particularly within the same cell
population, is currently limited by the low sensitivity and high technical noise of single-cell …

Single-cell sequencing in stem cell biology

L Wen, F Tang - Genome biology, 2016 - Springer
Cell-to-cell variation and heterogeneity are fundamental and intrinsic characteristics of stem
cell populations, but these differences are masked when bulk cells are used for omic …