A pooled cell painting CRISPR screening platform enables de novo inference of gene function by self-supervised deep learning
Pooled CRISPR screening has emerged as a powerful method of mapping gene functions
thanks to its scalability, affordability, and robustness against well or plate-specific …
thanks to its scalability, affordability, and robustness against well or plate-specific …
CEM500K, a large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning
R Conrad, K Narayan - Elife, 2021 - elifesciences.org
Automated segmentation of cellular electron microscopy (EM) datasets remains a challenge.
Supervised deep learning (DL) methods that rely on region-of-interest (ROI) annotations …
Supervised deep learning (DL) methods that rely on region-of-interest (ROI) annotations …
A review of adaptable conventional image processing pipelines and deep learning on limited datasets
The objective of this paper is to study the impact of limited datasets on deep learning
techniques and conventional methods in semantic image segmentation and to conduct a …
techniques and conventional methods in semantic image segmentation and to conduct a …
Perception and classification of emotions in nonsense speech: Humans versus machines
This article contributes to a more adequate modelling of emotions encoded in speech, by
addressing four fallacies prevalent in traditional affective computing: First, studies …
addressing four fallacies prevalent in traditional affective computing: First, studies …
[HTML][HTML] Impact of training data, ground truth and shape variability in the deep learning-based semantic segmentation of HeLa cells observed with electron microscopy
This paper investigates the impact of the amount of training data and the shape variability on
the segmentation provided by the deep learning architecture U-Net. Further, the correctness …
the segmentation provided by the deep learning architecture U-Net. Further, the correctness …
[HTML][HTML] Volumetric semantic instance segmentation of the plasma membrane of hela cells
In this work, an unsupervised volumetric semantic instance segmentation of the plasma
membrane of HeLa cells as observed with serial block face scanning electron microscopy is …
membrane of HeLa cells as observed with serial block face scanning electron microscopy is …
Comparison of methods to segment variable-contrast XCT images of methane-bearing sand using U-Nets trained on single dataset sub-volumes
FJ Alvarez-Borges, ONF King, BN Madhusudhan… - Methane, 2022 - mdpi.com
Methane (CH4) hydrate dissociation and CH4 release are potential geohazards currently
investigated using X-ray computed tomography (XCT). Image segmentation is an important …
investigated using X-ray computed tomography (XCT). Image segmentation is an important …
HeLa cell segmentation using digital image processing
EF Duque-Vazquez, RE Sanchez-Yanez… - Heliyon, 2024 - cell.com
Computational cell segmentation is a vital area of research, particularly in the analysis of
images of cancer cells. The use of cell lines, such as the widely utilized HeLa cell line, is …
images of cancer cells. The use of cell lines, such as the widely utilized HeLa cell line, is …
Efficient semi-supervised semantic segmentation of electron microscopy cancer images with sparse annotations
L Pagano, G Thibault, W Bousselham… - Frontiers in …, 2023 - frontiersin.org
Electron microscopy (EM) enables imaging at a resolution of nanometers and can shed light
on how cancer evolves to develop resistance to therapy. Acquiring these images has …
on how cancer evolves to develop resistance to therapy. Acquiring these images has …
Three-dimensional characterization of interorganelle contact sites in hepatocytes using serial section electron microscopy
Transmission electron microscopy has been long considered to be the gold standard for the
visualization of cellular ultrastructure. However, analysis is often limited to two dimensions …
visualization of cellular ultrastructure. However, analysis is often limited to two dimensions …