Methodological and clinical aspects of the molecular epidemiology of Mycobacterium tuberculosis and other mycobacteria

T Jagielski, A Minias, J van Ingen… - Clinical microbiology …, 2016 - Am Soc Microbiol
Molecular typing has revolutionized epidemiological studies of infectious diseases,
including those of a mycobacterial etiology. With the advent of fingerprinting techniques …

Genotyping of Mycobacterium Tuberculosis: Application in Epidemiologic Studies

M Kato-Maeda, JZ Metcalfe, L Flores - Future microbiology, 2011 - Taylor & Francis
Genotyping is used to track specific isolates of Mycobacterium tuberculosis in a community.
It has been successfully used in epidemiologic research (termed 'molecular epidemiology ') …

Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a …

J Zhang, E Abadia, G Refregier… - Journal of medical …, 2010 - microbiologyresearch.org
The aims of the present study were to implement a microbead-based 'spoligotyping'
technique and to evaluate improvements by the addition of a panel of 25 extra spacers that …

Whole-genome sequencing to detect recent transmission of Mycobacterium tuberculosis in settings with a high burden of tuberculosis

T Luo, C Yang, Y Peng, L Lu, G Sun, J Wu, X Jin… - Tuberculosis, 2014 - Elsevier
Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been used to trace
the transmission of M. tuberculosis, the causative agent of tuberculosis (TB). Previously …

DNA fingerprinting of Mycobacterium tuberculosis: from phage typing to whole-genome sequencing

AC Schürch, D van Soolingen - Infection, genetics and evolution, 2012 - Elsevier
Current typing methods for Mycobacterium tuberculosis complex evolved from simple
phenotypic approaches like phage typing and drug susceptibility profiling to DNA-based …

Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit–variable-number tandem-repeat loci for subtyping of Mycobacterium …

C Allix-Béguec, C Wahl, M Hanekom… - Journal of clinical …, 2014 - Am Soc Microbiol
Mycobacterium tuberculosis Beijing strains represent targets of special importance for
molecular surveillance of tuberculosis (TB), especially because they are associated with …

Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high-throughput 3R SNPs based method

E Abadia, J Zhang, T dos Vultos, V Ritacco… - Infection, genetics and …, 2010 - Elsevier
We developed a new multiplexed-PCR assay to accurately classify Mycobacterium
tuberculosis complex (MTC) isolates at the sublineage level by single nucleotide …

Molecular characterization of Mycobacterium tuberculosis isolates from North Indian patients with extrapulmonary tuberculosis

MM Sankar, J Singh, SCA Diana, S Singh - Tuberculosis, 2013 - Elsevier
Genotypic studies are important to understand the molecular epidemiology and transmission
routes of Mycobacterium tuberculosis. In the first and largest study from India, spoligotyping …

[HTML][HTML] Whole Genome Sequencing Demonstrates Limited Transmission within Identified Mycobacterium tuberculosis Clusters in New South Wales, Australia

U Gurjav, AC Outhred, P Jelfs, N McCallum, Q Wang… - PloS one, 2016 - journals.plos.org
Australia has a low tuberculosis incidence rate with most cases occurring among recent
immigrants. Given suboptimal cluster resolution achieved with 24-locus mycobacterium …

Genetic Diversity of Mycobacterium tuberculosis Isolates from a Tertiary Care Tuberculosis Hospital in South Korea

IC Shamputa, J Lee, C Allix-Béguec… - Journal of clinical …, 2010 - Am Soc Microbiol
Tuberculosis (TB) remains an immense public health problem in the Republic of Korea
despite a more than fivefold decrease in the prevalence of the disease over the last 3 …