Metal–base pairing in DNA

GH Clever, M Shionoya - Coordination Chemistry Reviews, 2010 - Elsevier
The use of DNA as a molecular wire in nanoscale electronic architectures would greatly
benefit from its capability of sequence-specific self-assembly. Although single electrons and …

Structures, physicochemical properties, and applications of T–Hg II–T, C–Ag I–C, and other metallo-base-pairs

Y Tanaka, J Kondo, V Sychrovský, J Šebera… - Chemical …, 2015 - pubs.rsc.org
Recently, metal-mediated base-pairs (metallo-base-pairs) have been studied extensively
with the aim of exploring novel base-pairs; their structures, physicochemical properties, and …

Dispersion interactions from a local polarizability model

OA Vydrov, T Van Voorhis - Physical Review A—Atomic, Molecular, and Optical …, 2010 - APS
A local approximation for dynamic polarizability leads to a nonlocal functional for the long-
range dispersion interaction energy via an imaginary-frequency integral. We analyze …

Alternative DNA base pairing through metal coordination

GH Clever, M Shionoya - Interplay between Metal Ions and Nucleic Acids, 2012 - Springer
Base-pairing in the naturally occurring DNA and RNA oligonucleotide duplexes is based on
π-stacking, hydrogen bonding, and shape complementarity between the nucleobases …

Theoretical study on reaction scheme of silver (I) containing 5-substituted uracils bridge formation

T Matsui, H Miyachi, T Baba… - The Journal of Physical …, 2011 - ACS Publications
We present a reaction scheme of silver containing 5-substituted uracils (N) bridge formation
with two silver ions to a silver-mediated base pair [N-Ag2-N] by using the conductor-like …

Electronic Properties of Artificial Metal‐DNA Base Pair Complexes Formed from Hydroxypyridone Base

A Üngördü, N Tezer - ChemistrySelect, 2020 - Wiley Online Library
The metal‐mediated hydroxypyridone base pairs containing Ni2+, Cu2+, Zn2+, Pd2+, Cd2+,
Pt2+, and Hg2+ ions were designed theoretically using by density functional theory (DFT) …

Possibility of multi-conformational structure of mismatch DNA nucleobase in the presence of silver (I) ions

H Miyachi, T Matsui, Y Shigeta, K Yamashita… - Chemical Physics …, 2010 - Elsevier
Geometrical and electronic structures of uracil nucleobase pair containing AgI ions have
been studied theoretically and computationally. Four stable conformers are expected to co …

The effect of some mono and bivalent metal cations on the individual hydrogen bond energies in A− T and G− C base pairs

H Delarami, A Ebrahimi… - Physical Chemistry …, 2013 - physchemres.org
The effect of interactions of various Ia and IIa cations with two positions of the adenine-
thymine (A− T) and guanine-cytosine (G− C) base pairs on the geometries and individual …

Computational Study of Cu–Containing Artificial DNA: Twist Angle Dependence of Magnetism

Y Orimoto, Y Aoki - ChemistrySelect, 2016 - Wiley Online Library
The magnetic properties of a copper‐containing artificial DNA (a 2, 6‐dipicolinate− Cu (II)−
pyridine complex‐based artificial DNA) were theoretically investigated at the ab initio …

Theoretical Studies on Metal-Containing Artificial DNA Bases

T Matsui, H Miyachi, Y Shigeta - Advances in the Theory of Quantum …, 2012 - Springer
We have studied three topics about (i) the structural stabilities and electronic structures of
metal-ion containing artificial DNA bases and (ii) conductivity of them. Before proceeding to …