Metal–base pairing in DNA
GH Clever, M Shionoya - Coordination Chemistry Reviews, 2010 - Elsevier
The use of DNA as a molecular wire in nanoscale electronic architectures would greatly
benefit from its capability of sequence-specific self-assembly. Although single electrons and …
benefit from its capability of sequence-specific self-assembly. Although single electrons and …
Structures, physicochemical properties, and applications of T–Hg II–T, C–Ag I–C, and other metallo-base-pairs
Recently, metal-mediated base-pairs (metallo-base-pairs) have been studied extensively
with the aim of exploring novel base-pairs; their structures, physicochemical properties, and …
with the aim of exploring novel base-pairs; their structures, physicochemical properties, and …
Dispersion interactions from a local polarizability model
OA Vydrov, T Van Voorhis - Physical Review A—Atomic, Molecular, and Optical …, 2010 - APS
A local approximation for dynamic polarizability leads to a nonlocal functional for the long-
range dispersion interaction energy via an imaginary-frequency integral. We analyze …
range dispersion interaction energy via an imaginary-frequency integral. We analyze …
Alternative DNA base pairing through metal coordination
GH Clever, M Shionoya - Interplay between Metal Ions and Nucleic Acids, 2012 - Springer
Base-pairing in the naturally occurring DNA and RNA oligonucleotide duplexes is based on
π-stacking, hydrogen bonding, and shape complementarity between the nucleobases …
π-stacking, hydrogen bonding, and shape complementarity between the nucleobases …
Theoretical study on reaction scheme of silver (I) containing 5-substituted uracils bridge formation
We present a reaction scheme of silver containing 5-substituted uracils (N) bridge formation
with two silver ions to a silver-mediated base pair [N-Ag2-N] by using the conductor-like …
with two silver ions to a silver-mediated base pair [N-Ag2-N] by using the conductor-like …
Electronic Properties of Artificial Metal‐DNA Base Pair Complexes Formed from Hydroxypyridone Base
A Üngördü, N Tezer - ChemistrySelect, 2020 - Wiley Online Library
The metal‐mediated hydroxypyridone base pairs containing Ni2+, Cu2+, Zn2+, Pd2+, Cd2+,
Pt2+, and Hg2+ ions were designed theoretically using by density functional theory (DFT) …
Pt2+, and Hg2+ ions were designed theoretically using by density functional theory (DFT) …
Possibility of multi-conformational structure of mismatch DNA nucleobase in the presence of silver (I) ions
Geometrical and electronic structures of uracil nucleobase pair containing AgI ions have
been studied theoretically and computationally. Four stable conformers are expected to co …
been studied theoretically and computationally. Four stable conformers are expected to co …
The effect of some mono and bivalent metal cations on the individual hydrogen bond energies in A− T and G− C base pairs
H Delarami, A Ebrahimi… - Physical Chemistry …, 2013 - physchemres.org
The effect of interactions of various Ia and IIa cations with two positions of the adenine-
thymine (A− T) and guanine-cytosine (G− C) base pairs on the geometries and individual …
thymine (A− T) and guanine-cytosine (G− C) base pairs on the geometries and individual …
Computational Study of Cu–Containing Artificial DNA: Twist Angle Dependence of Magnetism
Y Orimoto, Y Aoki - ChemistrySelect, 2016 - Wiley Online Library
The magnetic properties of a copper‐containing artificial DNA (a 2, 6‐dipicolinate− Cu (II)−
pyridine complex‐based artificial DNA) were theoretically investigated at the ab initio …
pyridine complex‐based artificial DNA) were theoretically investigated at the ab initio …
Theoretical Studies on Metal-Containing Artificial DNA Bases
We have studied three topics about (i) the structural stabilities and electronic structures of
metal-ion containing artificial DNA bases and (ii) conductivity of them. Before proceeding to …
metal-ion containing artificial DNA bases and (ii) conductivity of them. Before proceeding to …