[HTML][HTML] DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

H Weigand, AJ Beermann, F Čiampor, FO Costa… - Science of the Total …, 2019 - Elsevier
Effective identification of species using short DNA fragments (DNA barcoding and DNA
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …

Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

JJ Jin, WB Yu, JB Yang, Y Song, CW DePamphilis… - Genome biology, 2020 - Springer
GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from
whole genome sequencing data. It recruits organelle-associated reads using a modified …

GetOrganelle: a simple and fast pipeline for de novo assembly of a complete circular chloroplast genome using genome skimming data

JJ Jian, WB Yu, JB Yang, Y Song, TS Yi, DZ Li - BioRxiv, 2018 - biorxiv.org
Background: Chloroplast genes and genomes are the most important genomic data for plant
phylogeny and DNA barcoding. Since the rapid development of high throughput sequencing …

A comprehensive review on the main honey authentication issues: Production and origin

S Soares, JS Amaral, MBPP Oliveira… - … Reviews in Food …, 2017 - Wiley Online Library
Honey is a highly consumed natural product, not only for its taste and nutritional value, but
also for its health benefits. Owing to characteristics that are essentially or exclusively related …

Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …

Plant DNA barcoding: from gene to genome

X Li, Y Yang, RJ Henry, M Rossetto, Y Wang… - Biological …, 2015 - Wiley Online Library
ABSTRACT DNA barcoding is currently a widely used and effective tool that enables rapid
and accurate identification of plant species; however, none of the available loci work across …

Barcoding the kingdom Plantae: new PCR primers for ITS regions of plants with improved universality and specificity

T Cheng, C Xu, L Lei, C Li, Y Zhang… - Molecular ecology …, 2016 - Wiley Online Library
The internal transcribed spacer (ITS) of nuclear ribosomal DNA is one of the most commonly
used DNA markers in plant phylogenetic and DNA barcoding analyses, and it has been …

From barcodes to genomes: extending the concept of DNA barcoding

E Coissac, PM Hollingsworth, S Lavergne, P Taberlet - 2016 - Wiley Online Library
DNA barcoding has had a major impact on biodiversity science. The elegant simplicity of
establishing massive scale databases for a few barcode loci is continuing to change our …

The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation

MR Gostel, WJ Kress - Diversity, 2022 - mdpi.com
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …