Scalable functional assays for the interpretation of human genetic variation

D Tabet, V Parikh, P Mali, FP Roth… - Annual Review of …, 2022 - annualreviews.org
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …

Single-nucleus multi-omics of human stem cell-derived islets identifies deficiencies in lineage specification

P Augsornworawat, NJ Hogrebe, M Ishahak… - Nature Cell …, 2023 - nature.com
Insulin-producing β cells created from human pluripotent stem cells have potential as a
therapy for insulin-dependent diabetes, but human pluripotent stem cell-derived islets (SC …

Single-strand annealing in cancer

J Blasiak - International Journal of Molecular Sciences, 2021 - mdpi.com
DNA double-strand breaks (DSBs) are among the most serious forms of DNA damage. In
humans, DSBs are repaired mainly by non-homologous end joining (NHEJ) and …

High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly

MH Berryer, G Rizki, A Nathanson, JA Klein… - Elife, 2023 - elifesciences.org
Resolving fundamental molecular and functional processes underlying human synaptic
development is crucial for understanding normal brain function as well as dysfunction in …

A versatile, high-efficiency platform for CRISPR-based gene activation

AJ Heidersbach, KM Dorighi, JA Gomez… - Nature …, 2023 - nature.com
CRISPR-mediated transcriptional activation (CRISPRa) is a powerful technology for
inducing gene expression from endogenous loci with exciting applications in high …

Elucidating the Proximal Tubule HNF4A Gene Regulatory Network in Human Kidney Organoids

Y Yoshimura, Y Muto, K Omachi, JH Miner… - Journal of the …, 2023 - journals.lww.com
Background The proximal tubule plays a major role in electrolyte homeostasis. Previous
studies have shown that HNF4A regulates reabsorption-related genes and promotes …

[PDF][PDF] De novo DNA methyltransferases DNMT3A and DNMT3B are essential for XIST silencing for erosion of dosage compensation in pluripotent stem cells

A Fukuda, DZ Hazelbaker, N Motosugi, J Hao… - Stem Cell Reports, 2021 - cell.com
Human pluripotent stem cells (hPSCs) have proven to be valuable tools for both drug
discovery and the development of cell-based therapies. However, the long non-coding RNA …

Research and therapeutic approaches in stem cell genome editing by CRISPR toolkit

B Mollashahi, H Latifi-Navid, I Owliaee, S Shamdani… - Molecules, 2023 - mdpi.com
The most widely used genome editing toolkit is CRISPR (clustered regularly interspaced
short palindromic repeats). It provides the possibility of replacing and modifying DNA and …

[PDF][PDF] An integrated pipeline for mammalian genetic screening

C Kramme, AM Plesa, HH Wang, B Wolf, MP Smela… - Cell Reports …, 2021 - cell.com
With the recent advancements in genome editing, next-generation sequencing (NGS), and
scalable cloning techniques, scientists can now conduct genetic screens at unprecedented …

[PDF][PDF] Molecular convergence between Down syndrome and fragile X syndrome identified using human pluripotent stem cell models

SG Susco, S Ghosh, P Mazzucato, G Angelini… - Cell reports, 2022 - cell.com
Down syndrome (DS), driven by an extra copy of chromosome 21 (HSA21), and fragile X
syndrome (FXS), driven by loss of the RNA-binding protein FMRP, are two common genetic …