Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

[HTML][HTML] Application of machine learning in microbiology

K Qu, F Guo, X Liu, Y Lin, Q Zou - Frontiers in microbiology, 2019 - frontiersin.org
Microorganisms are ubiquitous and closely related to people's daily lives. Since they were
first discovered in the 19th century, researchers have shown great interest in …

[PDF][PDF] Breastmilk feeding practices are associated with the co-occurrence of bacteria in mothers' milk and the infant gut: the CHILD cohort study

K Fehr, S Moossavi, H Sbihi, RCT Boutin, L Bode… - Cell host & …, 2020 - cell.com
Gut microbiota play a critical role in infant health. It is now accepted that breastmilk contains
live bacteria from endogenous and exogenous sources, but it remains unclear whether …

Microbial network disturbances in relapsing refractory Crohn's disease

B Yilmaz, P Juillerat, O Øyås, C Ramon, FD Bravo… - Nature medicine, 2019 - nature.com
Inflammatory bowel diseases (IBD) can be broadly divided into Crohn's disease (CD) and
ulcerative colitis (UC) from their clinical phenotypes. Over 150 host susceptibility genes have …

[HTML][HTML] Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities

D Jiang, CR Armour, C Hu, M Mei, C Tian… - Frontiers in …, 2019 - frontiersin.org
The advent of large-scale microbiome studies affords newfound analytical opportunities to
understand how these communities of microbes operate and relate to their environment …

[HTML][HTML] From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes

C Frioux, D Singh, T Korcsmaros… - Computational and …, 2020 - Elsevier
Metagenomic sequencing of complete microbial communities has greatly enhanced our
understanding of the taxonomic composition of microbiotas. This has led to breakthrough …

Resolution and Cooccurrence Patterns of Gardnerella leopoldii, G. swidsinskii, G. piotii, and G. vaginalis within the Vaginal Microbiome

JE Hill, AYK Albert… - Infection and …, 2019 - Am Soc Microbiol
Gardnerella vaginalis is a hallmark of vaginal dysbiosis, but it is found in the microbiomes of
women with and without vaginal symptoms and those who do not have microbiologically …

[HTML][HTML] Next generation microbiome research: identification of keystone species in the metabolic regulation of host-gut microbiota interplay

H Tudela, SP Claus, M Saleh - Frontiers in Cell and Developmental …, 2021 - frontiersin.org
The community of the diverse microorganisms residing in the gastrointestinal tract, known as
the gut microbiota, is exceedingly being studied for its impact on health and disease. This …

[HTML][HTML] Characterization of the firm–firm public procurement co-bidding network from the State of Ceará (Brazil) municipalities

MS Lyra, A Curado, B Damásio… - Applied Network …, 2021 - appliednetsci.springeropen.com
Fraud in public funding can have deleterious consequences for societies' economic, social,
and political well-being. Fraudulent activity associated with public procurement contracts …

[PDF][PDF] Revealing the role of Plant Growth Promoting Rhizobacteria in suppressive soils against Fusarium oxysporum f. sp. cubense based on metagenomic analysis

Y Effendi, A Pancoro - Heliyon, 2021 - cell.com
Fusarium oxysporum f. sp. cubense (Foc) is a soil-borne pathogen causing fusarium wilt
banana disease. Management of soil-borne disease generally required the application of …