An introduction to spatial transcriptomics for biomedical research
CG Williams, HJ Lee, T Asatsuma, R Vento-Tormo… - Genome Medicine, 2022 - Springer
Single-cell transcriptomics (scRNA-seq) has become essential for biomedical research over
the past decade, particularly in developmental biology, cancer, immunology, and …
the past decade, particularly in developmental biology, cancer, immunology, and …
Direct cell reprogramming: approaches, mechanisms and progress
The reprogramming of somatic cells with defined factors, which converts cells from one
lineage into cells of another, has greatly reshaped our traditional views on cell identity and …
lineage into cells of another, has greatly reshaped our traditional views on cell identity and …
Single-cell RNA sequencing technologies and bioinformatics pipelines
Rapid progress in the development of next-generation sequencing (NGS) technologies in
recent years has provided many valuable insights into complex biological systems, ranging …
recent years has provided many valuable insights into complex biological systems, ranging …
[HTML][HTML] A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor
Single-cell RNA sequencing (scRNA-seq) is widely used to profile the transcriptome of
individual cells. This provides biological resolution that cannot be matched by bulk RNA …
individual cells. This provides biological resolution that cannot be matched by bulk RNA …
TH2 cell development and function
JA Walker, ANJ McKenzie - Nature Reviews Immunology, 2018 - nature.com
Abstract T helper 2 (TH 2) cells orchestrate protective type 2 immune responses, such as
those that target helminths and facilitate tissue repair, but also contribute to chronic …
those that target helminths and facilitate tissue repair, but also contribute to chronic …
SC3: consensus clustering of single-cell RNA-seq data
Single-cell RNA-seq enables the quantitative characterization of cell types based on global
transcriptome profiles. We present single-cell consensus clustering (SC3), a user-friendly …
transcriptome profiles. We present single-cell consensus clustering (SC3), a user-friendly …
Single-cell transcriptomics to explore the immune system in health and disease
MJT Stubbington, O Rozenblatt-Rosen, A Regev… - Science, 2017 - science.org
The immune system varies in cell types, states, and locations. The complex networks,
interactions, and responses of immune cells produce diverse cellular ecosystems composed …
interactions, and responses of immune cells produce diverse cellular ecosystems composed …
A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation
S Nestorowa, FK Hamey, B Pijuan Sala… - Blood, The Journal …, 2016 - ashpublications.org
Maintenance of the blood system requires balanced cell fate decisions by hematopoietic
stem and progenitor cells (HSPCs). Because cell fate choices are executed at the individual …
stem and progenitor cells (HSPCs). Because cell fate choices are executed at the individual …
A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications
RNA sequencing (RNA-seq) is a genomic approach for the detection and quantitative
analysis of messenger RNA molecules in a biological sample and is useful for studying …
analysis of messenger RNA molecules in a biological sample and is useful for studying …
[HTML][HTML] The technology and biology of single-cell RNA sequencing
The differences between individual cells can have profound functional consequences, in
both unicellular and multicellular organisms. Recently developed single-cell mRNA …
both unicellular and multicellular organisms. Recently developed single-cell mRNA …