Raman microspectroscopy for microbiology

KS Lee, Z Landry, FC Pereira, M Wagner… - Nature Reviews …, 2021 - nature.com
Raman microspectroscopy offers microbiologists a rapid and non-destructive technique to
assess the chemical composition of individual live microorganisms in near real time. In this …

Enzyme-free isothermal amplification strategy for the detection of tumor-associated biomarkers: A review

W Wang, Q Ge, X Zhao - TrAC Trends in Analytical Chemistry, 2023 - Elsevier
The detection of tumor-associated biomarkers contributes to personalized precision medical
treatment of cancer patients in early stage. Combined with nucleic acid amplification …

Unraveling metagenomics through long-read sequencing: A comprehensive review

C Kim, M Pongpanich, T Porntaveetus - Journal of Translational Medicine, 2024 - Springer
The study of microbial communities has undergone significant advancements, starting from
the initial use of 16S rRNA sequencing to the adoption of shotgun metagenomics. However …

Microbial single-cell omics: the crux of the matter

AK Kaster, MS Sobol - Applied Microbiology and Biotechnology, 2020 - Springer
Single-cell genomics and transcriptomics can provide reliable context for assembled
genome fragments and gene expression activity on the level of individual prokaryotic …

Prospects for multi-omics in the microbial ecology of water engineering

EA McDaniel, SA Wahl, S Ishii, A Pinto, R Ziels… - Water Research, 2021 - Elsevier
Advances in high-throughput sequencing technologies and bioinformatics approaches over
almost the last three decades have substantially increased our ability to explore …

Potential of flow cytometric approaches for rapid microbial detection and characterization in the food industry—A review

E Zand, A Froehling, C Schoenher… - Foods, 2021 - mdpi.com
As microbial contamination is persistent within the food and bioindustries and foodborne
infections are still a significant cause of death, the detection, monitoring, and …

[HTML][HTML] Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods

NA Bokulich, M Ziemski, MS Robeson II… - Computational and …, 2020 - Elsevier
Microbiomes are integral components of diverse ecosystems, and increasingly recognized
for their roles in the health of humans, animals, plants, and other hosts. Given their …

Correlative SIP-FISH-Raman-SEM-NanoSIMS links identity, morphology, biochemistry, and physiology of environmental microbes

GA Schaible, AJ Kohtz, J Cliff… - ISME …, 2022 - academic.oup.com
Microscopic and spectroscopic techniques are commonly applied to study microbial cells but
are typically used on separate samples, resulting in population-level datasets that are …

Ecosystem-specific microbiota and microbiome databases in the era of big data

V Lobanov, A Gobet, A Joyce - Environmental Microbiome, 2022 - Springer
The rapid development of sequencing methods over the past decades has accelerated both
the potential scope and depth of microbiota and microbiome studies. Recent developments …

A targeted approach to enrich host-associated bacteria for metagenomic sequencing

AM Dungan, K Tandon, V Jameson, CR Gotze… - FEMS …, 2024 - academic.oup.com
Multicellular eukaryotic organisms are hosts to communities of bacteria that reside on or
inside their tissues. Often the eukaryotic members of the system contribute to high …