Applications of genotyping by sequencing in aquaculture breeding and genetics

D Robledo, C Palaiokostas, L Bargelloni… - Reviews in …, 2018 - Wiley Online Library
Selective breeding is increasingly recognized as a key component of sustainable production
of aquaculture species. The uptake of genomic technology in aquaculture breeding has …

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools

F Dufresne, M Stift, R Vergilino, BK Mable - Molecular ecology, 2014 - Wiley Online Library
Despite the importance of polyploidy and the increasing availability of new genomic data,
there remain important gaps in our knowledge of polyploid population genetics. These gaps …

[HTML][HTML] Genotyping-by-sequencing in ecological and conservation genomics

SR Narum, CA Buerkle, JW Davey, MR Miller… - Molecular …, 2013 - ncbi.nlm.nih.gov
The fields of ecological and conservation genetics have developed greatly in recent
decades through the use of molecular markers to investigate organisms in their natural …

RAD genotyping reveals fine‐scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the a Merican Lobster (H …

L Benestan, T Gosselin, C Perrier… - Molecular …, 2015 - Wiley Online Library
Deciphering genetic structure and inferring connectivity in marine species have been
challenging due to weak genetic differentiation and limited resolution offered by traditional …

Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping

M Gautier, J Foucaud, K Gharbi, T Cézard… - Molecular …, 2013 - Wiley Online Library
Molecular markers produced by next‐generation sequencing (NGS) technologies are
revolutionizing genetic research. However, the costs of analysing large numbers of …

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADS eq)

CF Graham, TC Glenn, AG McArthur… - Molecular ecology …, 2015 - Wiley Online Library
Degraded DNA from suboptimal field sampling is common in molecular ecology. However,
its impact on techniques that use restriction site associated next‐generation DNA …

Genotyping-by-sequencing: a promising tool for plant genetics research and breeding

YS Chung, SC Choi, TH Jun, C Kim - Horticulture, Environment, and …, 2017 - Springer
Plant genetics studies and breeding programs utilize the genetic variation caused by DNA
polymorphisms. Molecular makers are used to detect these variations in the DNA. The …

Identifying patterns of dispersal, connectivity and selection in the sea scallop, Placopecten magellanicus, using RADseq‐derived SNPs

M Van Wyngaarden, PVR Snelgrove… - Evolutionary …, 2017 - Wiley Online Library
Understanding patterns of dispersal and connectivity among marine populations can directly
inform fisheries conservation and management. Advances in high‐throughput sequencing …

Using heat shock protein (HSP) inducers as an approach to increase the viability of sterlet (Pisces; Acipenseridae; Acipenser ruthenus) cells against environmental …

S Zarei, H Ghafouri, L Vahdatiraad… - Journal of Hazardous …, 2024 - Elsevier
Diazinon (DZN) is an organophosphate pesticide frequently used in agriculture and
released into aquatic environments. In this study, sterlet sturgeon cells were exposed to DZN …

Population genomics of an endemic Mediterranean fish: differentiation by fine scale dispersal and adaptation

C Carreras, V Ordóñez, L Zane, C Kruschel, I Nasto… - Scientific Reports, 2017 - nature.com
The assessment of the genetic structuring of biodiversity is crucial for management and
conservation. For species with large effective population sizes a low number of markers may …