Experimental Evolution with Caenorhabditis Nematodes

H Teotónio, S Estes, PC Phillips, CF Baer - Genetics, 2017 - academic.oup.com
The hermaphroditic nematode Caenorhabditis elegans has been one of the primary model
systems in biology since the 1970s, but only within the last two decades has this nematode …

Males, Outcrossing, and Sexual Selection in Caenorhabditis Nematodes

AD Cutter, LT Morran, PC Phillips - Genetics, 2019 - academic.oup.com
Males of Caenorhabditis elegans provide a crucial practical tool in the laboratory, but, as the
rarer and more finicky sex, have not enjoyed the same depth of research attention as …

The UCSC genome browser database: 2016 update

ML Speir, AS Zweig, KR Rosenbloom… - Nucleic acids …, 2016 - academic.oup.com
For the past 15 years, the UCSC Genome Browser (http://genome. ucsc. edu/) has served
the international research community by offering an integrated platform for viewing and …

Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans

D Lee, S Zdraljevic, L Stevens, Y Wang… - Nature ecology & …, 2021 - nature.com
Across diverse taxa, selfing species have evolved independently from outcrossing species
thousands of times. The transition from outcrossing to selfing decreases the effective …

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith… - GigaScience, 2016 - Springer
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations

TA Crombie, S Zdraljevic, DE Cook, RE Tanny… - Elife, 2019 - elifesciences.org
Hawaiian isolates of the nematode species Caenorhabditis elegans have long been known
to harbor genetic diversity greater than the rest of the worldwide population, but this …

Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions

R Kajitani, D Yoshimura, M Okuno, Y Minakuchi… - Nature …, 2019 - nature.com
The ultimate goal for diploid genome determination is to completely decode homologous
chromosomes independently, and several phasing programs from consensus sequences …

Balancing selection shapes density-dependent foraging behaviour

JS Greene, M Brown, M Dobosiewicz, IG Ishida… - Nature, 2016 - nature.com
The optimal foraging strategy in a given environment depends on the number of competing
individuals and their behavioural strategies. Little is known about the genes and neural …

[PDF][PDF] Natural genetic variation as a tool for discovery in Caenorhabditis nematodes

EC Andersen, MV Rockman - Genetics, 2022 - academic.oup.com
Over the last 20 years, studies of Caenorhabditis elegans natural diversity have
demonstrated the power of quantitative genetic approaches to reveal the evolutionary …

Ancient diversity in host-parasite interaction genes in a model parasitic nematode

L Stevens, I Martínez-Ugalde, E King, M Wagah… - Nature …, 2023 - nature.com
Host-parasite interactions exert strong selection pressures on the genomes of both host and
parasite. These interactions can lead to negative frequency-dependent selection, a form of …