[HTML][HTML] Bacteriophages of the human gut: the “known unknown” of the microbiome

AN Shkoporov, C Hill - Cell host & microbe, 2019 - cell.com
The human gut microbiome is a dense and taxonomically diverse consortium of
microorganisms. While the bacterial components of the microbiome have received …

Pasteurella multocida: genotypes and genomics

Z Peng, X Wang, R Zhou, H Chen… - … and Molecular Biology …, 2019 - Am Soc Microbiol
Pasteurella multocida is a highly versatile pathogen capable of causing infections in a wide
range of domestic and wild animals as well as in humans and nonhuman primates. Despite …

Clinker & clustermap. js: Automatic generation of gene cluster comparison figures

CLM Gilchrist, YH Chooi - Bioinformatics, 2021 - academic.oup.com
Genes involved in biological pathways are often collocalised in gene clusters, the
comparison of which can give valuable insights into their function and evolutionary history …

[HTML][HTML] Combination of pre-adapted bacteriophage therapy and antibiotics for treatment of fracture-related infection due to pandrug-resistant Klebsiella pneumoniae

A Eskenazi, C Lood, J Wubbolts, M Hites… - Nature …, 2022 - nature.com
A 30-year-old bombing victim with a fracture-related pandrug-resistant Klebsiella
pneumoniae infection after long-term (> 700 days) antibiotic therapy is treated with a pre …

[HTML][HTML] Massive expansion of human gut bacteriophage diversity

LF Camarillo-Guerrero, A Almeida, G Rangel-Pineros… - Cell, 2021 - cell.com
Bacteriophages drive evolutionary change in bacterial communities by creating gene flow
networks that fuel ecological adaptions. However, the extent of viral diversity and its …

[HTML][HTML] VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences

K Kieft, Z Zhou, K Anantharaman - Microbiome, 2020 - Springer
Background Viruses are central to microbial community structure in all environments. The
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …

[HTML][HTML] Interrogating the viral dark matter of the rumen ecosystem with a global virome database

M Yan, AA Pratama, S Somasundaram, Z Li… - Nature …, 2023 - nature.com
The diverse rumen virome can modulate the rumen microbiome, but it remains largely
unexplored. Here, we mine 975 published rumen metagenomes for viral sequences, create …

[HTML][HTML] Detection of Streptococcus pyogenes M1UK in Australia and characterization of the mutation driving enhanced expression of superantigen SpeA

MR Davies, N Keller, S Brouwer, MG Jespersen… - Nature …, 2023 - nature.com
A new variant of Streptococcus pyogenes serotype M1 (designated 'M1UK') has been
reported in the United Kingdom, linked with seasonal scarlet fever surges, marked increase …

[HTML][HTML] Antimicrobial resistance and population genomics of multidrug-resistant Escherichia coli in pig farms in mainland China

Z Peng, Z Hu, Z Li, X Zhang, C Jia, T Li, M Dai… - Nature …, 2022 - nature.com
The expanding use of antimicrobials in livestock is an important contributor to the worldwide
rapid increase in antimicrobial resistance (AMR). However, large-scale studies on AMR in …

Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli

J Sun, C Chen, CY Cui, Y Zhang, X Liu, ZH Cui… - Nature …, 2019 - nature.com
Tigecycline is one of the last-resort antibiotics to treat complicated infections caused by both
multidrug-resistant Gram-negative and Gram-positive bacteria. Tigecycline resistance has …