Generative machine learning for de novo drug discovery: A systematic review

DD Martinelli - Computers in Biology and Medicine, 2022 - Elsevier
Recent research on artificial intelligence indicates that machine learning algorithms can
auto-generate novel drug-like molecules. Generative models have revolutionized de novo …

Graph neural networks for automated de novo drug design

J Xiong, Z Xiong, K Chen, H Jiang, M Zheng - Drug discovery today, 2021 - Elsevier
Highlights•GNN has attracted wide attention from the field of designing drug molecules.•The
applications of GNN in molecule scoring, molecule generation and optimization, and …

Self-supervised learning: Generative or contrastive

X Liu, F Zhang, Z Hou, L Mian, Z Wang… - IEEE transactions on …, 2021 - ieeexplore.ieee.org
Deep supervised learning has achieved great success in the last decade. However, its
defects of heavy dependence on manual labels and vulnerability to attacks have driven …

Language models can learn complex molecular distributions

D Flam-Shepherd, K Zhu, A Aspuru-Guzik - Nature Communications, 2022 - nature.com
Deep generative models of molecules have grown immensely in popularity, trained on
relevant datasets, these models are used to search through chemical space. The …

Graphaf: a flow-based autoregressive model for molecular graph generation

C Shi, M Xu, Z Zhu, W Zhang, M Zhang… - arXiv preprint arXiv …, 2020 - arxiv.org
Molecular graph generation is a fundamental problem for drug discovery and has been
attracting growing attention. The problem is challenging since it requires not only generating …

Graphdf: A discrete flow model for molecular graph generation

Y Luo, K Yan, S Ji - International conference on machine …, 2021 - proceedings.mlr.press
We consider the problem of molecular graph generation using deep models. While graphs
are discrete, most existing methods use continuous latent variables, resulting in inaccurate …

Moflow: an invertible flow model for generating molecular graphs

C Zang, F Wang - Proceedings of the 26th ACM SIGKDD international …, 2020 - dl.acm.org
Generating molecular graphs with desired chemical properties driven by deep graph
generative models provides a very promising way to accelerate drug discovery process …

Generative deep learning for targeted compound design

T Sousa, J Correia, V Pereira… - Journal of chemical …, 2021 - ACS Publications
In the past few years, de novo molecular design has increasingly been using generative
models from the emergent field of Deep Learning, proposing novel compounds that are …

Graph networks for molecular design

R Mercado, T Rastemo, E Lindelöf… - Machine Learning …, 2021 - iopscience.iop.org
Deep learning methods applied to chemistry can be used to accelerate the discovery of new
molecules. This work introduces GraphINVENT, a platform developed for graph-based …

A unified framework for deep symbolic regression

M Landajuela, CS Lee, J Yang… - Advances in …, 2022 - proceedings.neurips.cc
The last few years have witnessed a surge in methods for symbolic regression, from
advances in traditional evolutionary approaches to novel deep learning-based systems …