[HTML][HTML] Diversity and ecology of protists revealed by metabarcoding
Protists are the dominant eukaryotes in the biosphere where they play key functional roles.
While protists have been studied for over a century, it is the high-throughput sequencing of …
While protists have been studied for over a century, it is the high-throughput sequencing of …
[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
[HTML][HTML] High-resolution metagenomic reconstruction of the freshwater spring bloom
Background The phytoplankton spring bloom in freshwater habitats is a complex, recurring,
and dynamic ecological spectacle that unfolds at multiple biological scales. Although …
and dynamic ecological spectacle that unfolds at multiple biological scales. Although …
Perspectives from ten years of protist studies by high‐throughput metabarcoding
During the last decade, high‐throughput metabarcoding became routine for analyzing
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …
Current practice in plankton metabarcoding: optimization and error management
LF Santoferrara - Journal of Plankton Research, 2019 - academic.oup.com
High-throughput sequencing of a targeted genetic marker is being widely used to analyze
biodiversity across taxa and environments. Amid a multitude of exciting findings, scientists …
biodiversity across taxa and environments. Amid a multitude of exciting findings, scientists …
Ecology of planktonic ciliates in a changing world: concepts, methods, and challenges
T Weisse, DJS Montagnes - Journal of Eukaryotic Microbiology, 2022 - Wiley Online Library
Plankton ecologists ultimately focus on forecasting, both applied and environmental
outcomes. We review how appreciating planktonic ciliates has become central to these …
outcomes. We review how appreciating planktonic ciliates has become central to these …
[PDF][PDF] Metabarcoding data allow for reliable biomass estimates in the most abundant animals on earth
J Schenk, S Geisen, N Kleinboelting… - Metabarcoding and …, 2019 - mbmg.pensoft.net
Microscopic organisms are the dominant and most diverse organisms on Earth. Nematodes,
as part of this microscopic diversity, are by far the most abundant animals and their diversity …
as part of this microscopic diversity, are by far the most abundant animals and their diversity …
[HTML][HTML] CARD-FISH in the sequencing era: opening a new universe of protistan ecology
Phagotrophic protists are key players in aquatic food webs. Although sequencing-based
studies have revealed their enormous diversity, ecological information on in situ abundance …
studies have revealed their enormous diversity, ecological information on in situ abundance …
[HTML][HTML] Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes
Ciliates are unicellular heterotrophic organisms that play a key role in aquatic planktonic
and benthic food webs. Advances in sedimentary DNA (sed-DNA) analysis offer the …
and benthic food webs. Advances in sedimentary DNA (sed-DNA) analysis offer the …