The interface of protein structure, protein biophysics, and molecular evolution

DA Liberles, SA Teichmann, I Bahar, U Bastolla… - Protein …, 2012 - Wiley Online Library
Abstract The interface of protein structural biology, protein biophysics, molecular evolution,
and molecular population genetics forms the foundations for a mechanistic understanding of …

Biophysical models of protein evolution: understanding the patterns of evolutionary sequence divergence

J Echave, CO Wilke - Annual review of biophysics, 2017 - annualreviews.org
For decades, rates of protein evolution have been interpreted in terms of the vague concept
of functional importance. Slowly evolving proteins or sites within proteins were assumed to …

Trends in substitution models of molecular evolution

M Arenas - Frontiers in genetics, 2015 - frontiersin.org
Substitution models of evolution describe the process of genetic variation through fixed
mutations and constitute the basis of the evolutionary analysis at the molecular level. Almost …

A combined empirical and mechanistic codon model

A Doron-Faigenboim, T Pupko - Molecular biology and evolution, 2007 - academic.oup.com
The evolutionary selection forces acting on a protein are commonly inferred using
evolutionary codon models by contrasting the rate of synonymous to nonsynonymous …

The evolution of protein structures and structural ensembles under functional constraint

J Siltberg-Liberles, JA Grahnen, DA Liberles - Genes, 2011 - mdpi.com
Protein sequence, structure, and function are inherently linked through evolution and
population genetics. Our knowledge of protein structure comes from solved structures in the …

Protein evolution along phylogenetic histories under structurally constrained substitution models

M Arenas, HG Dos Santos, D Posada… - Bioinformatics, 2013 - academic.oup.com
Motivation: Models of molecular evolution aim at describing the evolutionary processes at
the molecular level. However, current models rarely incorporate information from protein …

The quest for natural selection in the age of comparative genomics

M Anisimova, DA Liberles - Heredity, 2007 - nature.com
Continued genome sequencing has fueled progress in statistical methods for understanding
the action of natural selection at the molecular level. This article reviews various statistical …

[图书][B] Codon evolution: mechanisms and models

GM Cannarozzi, A Schneider - 2012 - books.google.com
Codon-based models of evolution are a relatively new addition to the toolkit of
computational biologists, and in recent years remarkable progress has been made in this …

Biophysical and structural considerations for protein sequence evolution

JA Grahnen, P Nandakumar, J Kubelka… - BMC evolutionary …, 2011 - Springer
Background Protein sequence evolution is constrained by the biophysics of folding and
function, causing interdependence between interacting sites in the sequence. However …

[PDF][PDF] Interaksi Molekuler Amonium Hidroksida

AP Lubis, R Zainul - 2018 - scholar.archive.org
Amonium hidroksida adalah larutan amonia didalam air dengan rumus NH4OH. Amonium
hidroksida merupakan senyawa yang tidak berwarna dan memiliki bau yang sangat tajam …