[PDF][PDF] Virtual screening strategies in drug design–methods and applications

E Bielska, X Lucas, A Czerwoniec, JM Kasprzak… - …, 2011 - journals.pan.pl
Virtual screening (VS) overcomes the limitations of traditional high-throughput screening
(HTS) by applying computer-based methods in drug discovery. VS takes advantage of fast …

Recent trends and applications in 3D virtual screening

L Ghemtio, VI Perez-Nueno, V Leroux… - … Chemistry & High …, 2012 - ingentaconnect.com
Virtual screening (VS) is becoming an increasingly important approach for identifying and
selecting biologically active molecules against specific pharmaceutically relevant targets …

Identification of New Antifungal Compounds Targeting Thioredoxin Reductase of Paracoccidioides Genus

AKR Abadio, ES Kioshima, V Leroux, NF Martins… - PLoS …, 2015 - journals.plos.org
The prevalence of invasive fungal infections worldwide has increased in the last decades.
The development of specific drugs targeting pathogenic fungi without producing collateral …

Selection of potential anti-adhesion drugs by in silico approaches targeted to ALS3 from Candida albicans

ES Kioshima, CS Shinobu-Mesquita, AKR Abadio… - Biotechnology …, 2019 - Springer
Objective To select potential ligands of ALS3 for drug development with anti-adhesion
and/or anti-biofilm activities. Methodology ALS3 model was considered stable by DM. The …

One Century of Study: What We Learned about Paracoccidioides and How This Pathogen Contributed to Advances in Antifungal Therapy

E Seki Kioshima, P de Souza Bonfim de Mendonça… - Journal of Fungi, 2021 - mdpi.com
Paracoccidioidomycosis (PCM) is a notable fungal infection restricted to Latin America.
Since the first description of the disease by Lutz up to the present day, Brazilian researchers …

Using consensus-shape clustering to identify promiscuous ligands and protein targets and to choose the right query for shape-based virtual screening

VI Pérez-Nueno, DW Ritchie - Journal of chemical information and …, 2011 - ACS Publications
Ligand-based shape matching approaches have become established as important and
popular virtual screening (VS) techniques. However, despite their relative success, many …

Benchmarking of HPCC: a novel 3D molecular representation combining shape and pharmacophoric descriptors for efficient molecular similarity assessments

AS Karaboga, F Petronin, G Marchetti… - Journal of Molecular …, 2013 - Elsevier
Since 3D molecular shape is an important determinant of biological activity, designing
accurate 3D molecular representations is still of high interest. Several chemoinformatic …

GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease

E Bresso, R Togawa, K Hammond-Kosack, M Urban… - BMC …, 2016 - Springer
Backgound Fusarium graminearum (FG) is one of the major cereal infecting pathogens
causing high economic losses worldwide and resulting in adverse effects on human and …

VSDMIP 1.5: an automated structure-and ligand-based virtual screening platform with a PyMOL graphical user interface

AC Cabrera, R Gil-Redondo, A Perona, F Gago… - Journal of computer …, 2011 - Springer
A graphical user interface (GUI) for our previously published virtual screening (VS) and data
management platform VSDMIP (Gil-Redondo et al. J Comput Aided Mol Design, 23: 171 …

Identification of novel liver X receptor activators by structure-based modeling

S von Grafenstein, J Mihaly-Bison… - Journal of chemical …, 2012 - ACS Publications
Liver X receptors (LXRs) are members of the nuclear receptor family. Activators of LXRs are
of high pharmacological interest as LXRs regulate cholesterol, fatty acid, and carbohydrate …