Single nucleus multiomics identifies ZEB1 and MAFB as candidate regulators of Alzheimer's disease-specific cis-regulatory elements
AG Anderson, BB Rogers, JM Loupe… - Cell Genomics, 2023 - cell.com
Cell type-specific transcriptional differences between brain tissues from donors with
Alzheimer's disease (AD) and unaffected controls have been well documented, but few …
Alzheimer's disease (AD) and unaffected controls have been well documented, but few …
A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data
JU Loers, V Vermeirssen - Briefings in Bioinformatics, 2024 - academic.oup.com
Eukaryotic gene regulation is a combinatorial, dynamic, and quantitative process that plays
a vital role in development and disease and can be modeled at a systems level in gene …
a vital role in development and disease and can be modeled at a systems level in gene …
The DEAD-box helicase Hlc regulates basal transcription and chromatin opening of stress-responsive genes
R Jia, J Lin, J You, S Li, G Shan… - Nucleic Acids …, 2022 - academic.oup.com
Stress-responsive genes are lowly transcribed under normal conditions and robustly
induced in response to stress. The significant difference between basal and induced …
induced in response to stress. The significant difference between basal and induced …
Early-life stress and ovarian hormones alter transcriptional regulation in the nucleus accumbens resulting in sex-specific responses to cocaine
Early-life stress and ovarian hormones contribute to increased female vulnerability to
cocaine addiction. Here, we reveal molecular substrates in the reward area, the nucleus …
cocaine addiction. Here, we reveal molecular substrates in the reward area, the nucleus …
Loss of the accessory chromosome converts a pathogenic tree-root fungus into a mutualistic endophyte
H Wei, Z Zhong, Z Li, Y Zhang, EH Stukenbrock… - Plant …, 2024 - cell.com
Some fungal accessory chromosomes (ACs) may contribute to virulence in plants. However,
the mechanisms by which ACs determine specific traits associated with lifestyle transitions …
the mechanisms by which ACs determine specific traits associated with lifestyle transitions …
Chromatin accessibility and transcriptional landscape in PK-15 cells during early exposure to Aflatoxin B1
C Li, X Liu, J Liu, X Zhang, J Wu, X Ji, H Niu… - … and Biophysical Research …, 2024 - Elsevier
Abstract Aflatoxin B 1 (AFB 1) not only causes significant losses in livestock production but
also poses a serious threat to human health. It is the most carcinogenic among known …
also poses a serious threat to human health. It is the most carcinogenic among known …
Systematic Multi-Omics Investigation of Androgen Receptor Driven Gene Expression and Epigenetics changes in Prostate Cancer
Background: Prostate cancer, a common malignancy, is driven by androgen receptor (AR)
signaling. Understanding the function of AR signaling is critical for prostate cancer research …
signaling. Understanding the function of AR signaling is critical for prostate cancer research …
Ancestry‐related differences in chromatin accessibility and gene expression of APOE ε4 are associated with Alzheimer's disease risk
Introduction European local ancestry (ELA) surrounding apolipoprotein E (APOE) ε4 confers
higher risk for Alzheimer's disease (AD) compared to African local ancestry (ALA). We …
higher risk for Alzheimer's disease (AD) compared to African local ancestry (ALA). We …
Single-cell ATAC sequencing identifies sleepy macrophages during reciprocity of cytokines in L. major infection
S Khandibharad, S Singh - Microbiology Spectrum, 2024 - Am Soc Microbiol
The hallmark characteristic of macrophages lies in their inherent plasticity, allowing them to
adapt to dynamic microenvironments. Leishmania strategically modulates the phenotypic …
adapt to dynamic microenvironments. Leishmania strategically modulates the phenotypic …
Ancestry-related differences in chromatin accessibility and gene expression of APOE4 are associated with Alzheimer disease risk
Background European local ancestry (ELA) surrounding APOE4 is associated with a higher
risk for Alzheimer Disease (AD) compared to African local ancestry (ALA). We previously …
risk for Alzheimer Disease (AD) compared to African local ancestry (ALA). We previously …