[HTML][HTML] Synthetic microbial communities

T Großkopf, OS Soyer - Current opinion in microbiology, 2014 - Elsevier
Highlights•Microbial interactions and system function are two ways to study
communities.•Natural microbial communities are difficult to define and to study.•Synthetic …

Bacterial growth: a statistical physicist's guide

RJ Allen, B Waclaw - Reports on Progress in Physics, 2018 - iopscience.iop.org
Bacterial growth presents many beautiful phenomena that pose new theoretical challenges
to statistical physicists, and are also amenable to laboratory experimentation. This review …

Community history affects the predictability of microbial ecosystem development

E Pagaling, F Strathdee, BM Spears, ME Cates… - The ISME …, 2014 - academic.oup.com
Microbial communities mediate crucial biogeochemical, biomedical and biotechnological
processes, yet our understanding of their assembly, and our ability to control its outcome …

Assembly of microbial communities in replicate nutrient‐cycling model ecosystems follows divergent trajectories, leading to alternate stable states

E Pagaling, K Vassileva, CG Mills… - Environmental …, 2017 - Wiley Online Library
We studied in detail the reproducibility of community development in replicate nutrient‐
cycling microbial microcosms that were set up identically and allowed to develop under the …

Cooperation in microbial populations: theory and experimental model systems

J Cremer, A Melbinger, K Wienand, T Henriquez… - Journal of molecular …, 2019 - Elsevier
Cooperative behavior, the costly provision of benefits to others, is common across all
domains of life. This review article discusses cooperative behavior in the microbial world …

Dividing active and passive particles in nonuniform nutrient environments

T Welker, H Stark - New Journal of Physics, 2024 - iopscience.iop.org
To explore the coupling between a growing population of microorganisms such as E. coli
and a nonuniform nutrient distribution, we formulate a minimalistic model. It consists of active …

Microbial mutualism at a distance: The role of geometry in diffusive exchanges

FJ Peaudecerf, F Bunbury, V Bhardwaj, MA Bees… - Physical Review E, 2018 - APS
The exchange of diffusive metabolites is known to control the spatial patterns formed by
microbial populations, as revealed by recent studies in the laboratory. However, the matrices …

Dividing active particles in nonuniform nutrient environments

T Welker, H Stark - arXiv preprint arXiv:2310.01645, 2023 - arxiv.org
To explore the coupling between a growing population of motile microorganisms such as E.
coli and a nonuniform nutrient distribution, we formulate a minimalistic model. It consists of …

Reaction-centric modeling of microbial ecosystems

S Louca, M Doebeli - Ecological modelling, 2016 - Elsevier
The growth of microbial populations catalyzing biochemical reactions leads to positive
feedback loops and self-amplifying process dynamics at ecosystem scales. Hence, the state …

Oscillations in soil bacterial redox reactions

AC Fowler, HF Winstanley, MJ McGuinness… - Journal of Theoretical …, 2014 - Elsevier
Spatial oscillations in soil contaminant concentration profiles are sometimes observed, but
rarely commented on, or are attributed to noisy data. In this paper we consider a possible …