Phenomics–technologies to relieve the phenotyping bottleneck

RT Furbank, M Tester - Trends in plant science, 2011 - cell.com
Global agriculture is facing major challenges to ensure global food security, such as the
need to breed high-yielding crops adapted to future climates and the identification of …

[HTML][HTML] New sensors and data-driven approaches—A path to next generation phenomics

T Roitsch, L Cabrera-Bosquet, A Fournier, K Ghamkhar… - Plant Science, 2019 - Elsevier
Abstract At the 4th International Plant Phenotyping Symposium meeting of the International
Plant Phenotyping Network (IPPN) in 2016 at CIMMYT in Mexico, a workshop was convened …

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models

HA Shihab, J Gough, DN Cooper, PD Stenson… - Human …, 2013 - Wiley Online Library
The rate at which nonsynonymous single nucleotide polymorphisms (ns SNP s) are being
identified in the human genome is increasing dramatically owing to advances in whole …

[HTML][HTML] Uberon, an integrative multi-species anatomy ontology

CJ Mungall, C Torniai, GV Gkoutos, SE Lewis… - Genome biology, 2012 - Springer
We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes
representing a variety of anatomical entities, organized according to traditional anatomical …

[HTML][HTML] Image-based phenotyping of plant disease symptoms

AM Mutka, RS Bart - Frontiers in plant science, 2015 - frontiersin.org
Plant diseases cause significant reductions in agricultural productivity worldwide. Disease
symptoms have deleterious effects on the growth and development of crop plants, limiting …

High‐throughput Phenotyping and Genomic Selection: The Frontiers of Crop Breeding ConvergeF

L Cabrera‐Bosquet, J Crossa… - Journal of integrative …, 2012 - Wiley Online Library
Genomic selection (GS) and high‐throughput phenotyping have recently been captivating
the interest of the crop breeding community from both the public and private sectors world …

Ionomics and the study of the plant ionome

DE Salt, I Baxter, B Lahner - Annu. Rev. Plant Biol., 2008 - annualreviews.org
The ionome is defined as the mineral nutrient and trace element composition of an organism
and represents the inorganic component of cellular and organismal systems. Ionomics, the …

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics

L Cooper, A Meier, MA Laporte, JL Elser… - Nucleic acids …, 2018 - academic.oup.com
Abstract The Planteome project (http://www. planteome. org) provides a suite of reference
and species-specific ontologies for plants and annotations to genes and phenotypes …

Vision, challenges and opportunities for a Plant Cell Atlas

SG Jha, AT Borowsky, BJ Cole, N Fahlgren, A Farmer… - Elife, 2021 - elifesciences.org
With growing populations and pressing environmental problems, future economies will be
increasingly plant-based. Now is the time to reimagine plant science as a critical component …

[HTML][HTML] Integration of root phenes for soil resource acquisition

LM York, EA Nord, JP Lynch - Frontiers in Plant Science, 2013 - frontiersin.org
Suboptimal availability of water and nutrients is a primary limitation to plant growth in
terrestrial ecosystems. The acquisition of soil resources by plant roots is therefore an …