[HTML][HTML] Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

N Gurdo, DC Volke, D McCloskey, PI Nikel - New Biotechnology, 2023 - Elsevier
Automation is playing an increasingly significant role in synthetic biology. Groundbreaking
technologies, developed over the past 20 years, have enormously accelerated the …

[HTML][HTML] New synthetic biology tools for metabolic control

X Lv, A Hueso-Gil, X Bi, Y Wu, Y Liu, L Liu… - Current Opinion in …, 2022 - Elsevier
In industrial bioprocesses, microbial metabolism dictates the product yields, and therefore,
our capacity to control it has an enormous potential to help us move towards a bio-based …

Modular (de) construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing

DC Volke, RA Martino, E Kozaeva, AM Smania… - Nature …, 2022 - nature.com
CRISPR/Cas technologies constitute a powerful tool for genome engineering, yet their use
in non-traditional bacteria depends on host factors or exogenous recombinases, which limits …

Systems engineering of Escherichia coli for high-level shikimate production

Z Li, C Gao, C Ye, L Guo, J Liu, X Chen, W Song… - Metabolic …, 2023 - Elsevier
To further increase the production efficiency of microbial shikimate, a valuable compound
widely used in the pharmaceutical and chemical industries, ten key target genes contributing …

[HTML][HTML] Integrated rational and evolutionary engineering of genome-reduced Pseudomonas putida strains promotes synthetic formate assimilation

J Turlin, B Dronsella, A De Maria, SN Lindner… - Metabolic …, 2022 - Elsevier
Formate is a promising, water-soluble C1 feedstock for biotechnology that can be efficiently
produced from CO 2—but formatotrophy has been engineered in only a few industrially …

A versatile microbial platform as a tunable whole-cell chemical sensor

JM Hernández-Sancho, A Boudigou… - Nature …, 2024 - nature.com
Biosensors are used to detect and quantify chemicals produced in industrial microbiology
with high specificity, sensitivity, and portability. Most biosensors, however, are limited by the …

[HTML][HTML] Genetic engineering strategies for sustainable polyhydroxyalkanoate (PHA) production from carbon-rich wastes

J Wang, S Liu, J Huang, R Cui, Y Xu, Z Song - Environmental technology & …, 2023 - Elsevier
Polyhydroxyalkanoates (PHAs) are promising biopolymers for biomedical applications due
to their excellent biocompatibility and biodegradability. However, the high production cost …

Advances in the optimization of central carbon metabolism in metabolic engineering

Z Wu, X Liang, M Li, M Ma, Q Zheng, D Li, T An… - Microbial Cell …, 2023 - Springer
Central carbon metabolism (CCM), including glycolysis, tricarboxylic acid cycle and the
pentose phosphate pathway, is the most fundamental metabolic process in the activities of …

[HTML][HTML] A synthetic C2 auxotroph of Pseudomonas putida for evolutionary engineering of alternative sugar catabolic routes

NT Wirth, N Gurdo, N Krink, À Vidal-Verdú, S Donati… - Metabolic …, 2022 - Elsevier
Acetyl-coenzyme A (AcCoA) is a metabolic hub in virtually all living cells, serving as both a
key precursor of essential biomass components and a metabolic sink for catabolic pathways …

Guide RNA structure design enables combinatorial CRISPRa programs for biosynthetic profiling

J Fontana, D Sparkman-Yager, I Faulkner… - Nature …, 2024 - nature.com
Engineering metabolism to efficiently produce chemicals from multi-step pathways requires
optimizing multi-gene expression programs to achieve enzyme balance. CRISPR-Cas …