Genetic analyses from ancient DNA

S Pääbo, H Poinar, D Serre… - Annu. Rev …, 2004 - annualreviews.org
▪ Abstract About 20 years ago, DNA sequences were separately described from the quagga
(a type of zebra) and an ancient Egyptian individual. What made these DNA sequences …

Ancient dna

E Willerslev, A Cooper - Proceedings of the Royal …, 2005 - royalsocietypublishing.org
In the past two decades, ancient DNA research has progressed from the retrieval of small
fragments of mitochondrial DNA from a few late Holocene specimens, to large-scale studies …

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

ME Allentoft, M Collins, D Harker… - … of the Royal …, 2012 - royalsocietypublishing.org
Claims of extreme survival of DNA have emphasized the need for reliable models of DNA
degradation through time. By analysing mitochondrial DNA (mtDNA) from 158 radiocarbon …

A “Copernican” reassessment of the human mitochondrial DNA tree from its root

DM Behar, M Van Oven, S Rosset, M Metspalu… - The American Journal of …, 2012 - cell.com
Mutational events along the human mtDNA phylogeny are traditionally identified relative to
the revised Cambridge Reference Sequence, a contemporary European sequence …

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA

AW Briggs, U Stenzel, M Meyer, J Krause… - Nucleic acids …, 2010 - academic.oup.com
ABSTRACT DNA sequences determined from ancient organisms have high error rates,
primarily due to uracil bases created by cytosine deamination. We use synthetic …

Quantifying temporal genomic erosion in endangered species

D Díez-del-Molino, F Sánchez-Barreiro, I Barnes… - Trends in Ecology & …, 2018 - cell.com
Many species have undergone dramatic population size declines over the past centuries.
Although stochastic genetic processes during and after such declines are thought to elevate …

Absence of the lactase-persistence-associated allele in early Neolithic Europeans

J Burger, M Kirchner, B Bramanti… - Proceedings of the …, 2007 - National Acad Sciences
Lactase persistence (LP), the dominant Mendelian trait conferring the ability to digest the
milk sugar lactose in adults, has risen to high frequency in central and northern Europeans …

Quantification of damage in DNA recovered from highly degraded samples–a case study on DNA in faeces

BE Deagle, JP Eveson, SN Jarman - Frontiers in zoology, 2006 - Springer
Background Poorly preserved biological tissues have become an important source of DNA
for a wide range of zoological studies. Measuring the quality of DNA obtained from these …

Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of Metazoa, and consequences for phylogenetic …

A Hassanin, N Leger, J Deutsch - Systematic biology, 2005 - academic.oup.com
Mitochondrial DNA (mtDNA) sequences are commonly used for inferring phylogenetic
relationships. However, the strand-specific bias in the nucleotide composition of the mtDNA …

Hybridization capture using RAD probes (hyRAD), a new tool for performing genomic analyses on collection specimens

T Suchan, C Pitteloud, NS Gerasimova, A Kostikova… - PloS one, 2016 - journals.plos.org
In the recent years, many protocols aimed at reproducibly sequencing reduced-genome
subsets in non-model organisms have been published. Among them, RAD-sequencing is …