Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

PhasiRNAs in plants: their biogenesis, genic sources, and roles in stress responses, development, and reproduction

Y Liu, C Teng, R Xia, BC Meyers - Plant Cell, 2020 - academic.oup.com
Phased secondary small interfering RNAs (phasiRNAs) constitute a major category of small
RNAs in plants, but most of their functions are still poorly defined. Some phasiRNAs, known …

Nurse cell–derived small RNAs define paternal epigenetic inheritance in Arabidopsis

J Long, J Walker, W She, B Aldridge, H Gao, S Deans… - Science, 2021 - science.org
INTRODUCTION Epigenetic modifications to chromatin, such as the methylation of DNA
cytosines, carry regulatory information across the generations in plants and animals …

Small RNA-mediated DNA methylation during plant reproduction

HT Chow, RA Mosher - The Plant Cell, 2023 - academic.oup.com
Reproductive tissues are a rich source of small RNAs, including several classes of short
interfering (si) RNAs that are restricted to this stage of development. In addition to RNA …

sRNAanno—a database repository of uniformly annotated small RNAs in plants

C Chen, J Li, J Feng, B Liu, L Feng, X Yu… - Horticulture …, 2021 - academic.oup.com
Small RNAs (sRNAs) are essential regulatory molecules, and there are three major sRNA
classes in plants: microRNAs (miRNAs), phased small interfering RNAs (phased siRNAs or …

Dicer-like 5 deficiency confers temperature-sensitive male sterility in maize

C Teng, H Zhang, R Hammond, K Huang… - Nature …, 2020 - nature.com
Small RNAs play important roles during plant development by regulating transcript levels of
target mRNAs, maintaining genome integrity, and reinforcing DNA methylation. Dicer-like 5 …

RNA silencing: From discovery and elucidation to application and perspectives

JH Zhao, HS Guo - Journal of integrative plant biology, 2022 - Wiley Online Library
RNA silencing (or RNA interference, RNAi) is a conserved mechanism for regulating gene
expression in eukaryotes. The discovery of natural trans‐kingdom RNAi indicated that small …

Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation

X Meng, A Li, B Yu, S Li - Computational and Structural Biotechnology …, 2021 - Elsevier
Plants employ sophisticated mechanisms to control developmental processes and to cope
with environmental changes at transcriptional and post-transcriptional levels. MicroRNAs …

Epigenetic gene regulation in plants and its potential applications in crop improvement

H Zhang, JK Zhu - Nature Reviews Molecular Cell Biology, 2024 - nature.com
DNA methylation, also known as 5-methylcytosine, is an epigenetic modification that has
crucial functions in plant growth, development and adaptation. The cellular DNA methylation …

TarDB: an online database for plant miRNA targets and miRNA-triggered phased siRNAs

J Liu, X Liu, S Zhang, S Liang, W Luan, X Ma - BMC genomics, 2021 - Springer
Abstract Background In plants, microRNAs (miRNAs) are pivotal regulators of plant
development and stress responses. Different computational tools and web servers have …