Life in Multi-Extreme Environments: Brines, Osmotic and Hydrostatic Pressure─ A Physicochemical View

JM Knop, S Mukherjee, MW Jaworek… - Chemical …, 2022 - ACS Publications
Elucidating the details of the formation, stability, interactions, and reactivity of biomolecular
systems under extreme environmental conditions, including high salt concentrations in …

Integrated computational approaches and tools for allosteric drug discovery

O Sheik Amamuddy, W Veldman, C Manyumwa… - International journal of …, 2020 - mdpi.com
Understanding molecular mechanisms underlying the complexity of allosteric regulation in
proteins has attracted considerable attention in drug discovery due to the benefits and …

Deactivation pathway of Ras GTPase underlies conformational substates as targets for drug design

S Lu, D Ni, C Wang, X He, H Lin, Z Wang, J Zhang - Acs Catalysis, 2019 - ACS Publications
Aberrant activation of Ras GTPase is closely associated with human cancers. Mechanistic
and structural insights into conformational transitions underlying the Ras deactivation …

The Ras switch in structural and historical perspective

R Gasper, F Wittinghofer - Biological chemistry, 2019 - degruyter.com
Since its discovery as an oncogene more than 40 years ago, Ras has been and still is in the
focus of many academic and pharmaceutical labs around the world. A huge amount of work …

Allosteric regulation at the crossroads of new technologies: multiscale modeling, networks, and machine learning

GM Verkhivker, S Agajanian, G Hu… - Frontiers in molecular …, 2020 - frontiersin.org
Allosteric regulation is a common mechanism employed by complex biomolecular systems
for regulation of activity and adaptability in the cellular environment, serving as an effective …

Insights into the cross talk between effector and allosteric lobes of KRAS from methyl conformational dynamics

FA Chao, S Dharmaiah, T Taylor… - Journal of the …, 2022 - ACS Publications
KRAS is the most frequently mutated RAS protein in cancer patients, and it is estimated that
about 20% of the cancer patients in the United States carried mutant RAS proteins. To …

Advances in NMR methods to map allosteric sites: from models to translation

S Boulton, G Melacini - Chemical Reviews, 2016 - ACS Publications
The last five years have witnessed major developments in the understanding of the allosteric
phenomenon, broadly defined as coupling between remote molecular sites. Such advances …

Reduced dynamic complexity allows structure elucidation of an excited state of KRASG13D

FA Chao, AH Chan, S Dharmaiah… - Communications …, 2023 - nature.com
Localized dynamics of RAS, including regions distal to the nucleotide-binding site, is of high
interest for elucidating the mechanisms by which RAS proteins interact with effectors and …

Conformational fluctuations in GTP-bound K-Ras: A metadynamics perspective with harmonic linear discriminant analysis

X Wang - Journal of Chemical Information and Modeling, 2021 - ACS Publications
Biomacromolecules often undergo significant conformational rearrangements during
function. In proteins, these motions typically consist in nontrivial, concerted rearrangement of …

Equilibria between conformational states of the Ras oncogene protein revealed by high pressure crystallography

E Girard, P Lopes, M Spoerner, AC Dhaussy… - Chemical …, 2022 - pubs.rsc.org
In this work, we experimentally investigate the allosteric transitions between conformational
states on the Ras oncogene protein using high pressure crystallography. Ras protein is a …