A comparative assessment of conventional and molecular methods, including MinION nanopore sequencing, for surveying water quality
Nucleic acid based techniques, such as quantitative PCR (qPCR) and next generation
sequencing (NGS), provide new insights into microbial water quality, but considerable …
sequencing (NGS), provide new insights into microbial water quality, but considerable …
Omics in the detection and identification of biosynthetic pathways related to mycotoxin synthesis
NM González-López, KA Huertas-Ortiz… - Analytical …, 2021 - pubs.rsc.org
Mycotoxins are secondary metabolites that are known to be toxic to humans and animals.
On the other hand, some mycotoxins and their analogues possess antioxidant as well as …
On the other hand, some mycotoxins and their analogues possess antioxidant as well as …
18S rDNA gene metabarcoding of microeukaryotes and epi‐endophytes in the holobiome of seven species of large brown algae
MFM Bjorbækmo, J Brodie, AK Krabberød… - Journal of …, 2023 - Wiley Online Library
Brown algae (Phaeophyceae) are habitat‐forming species in coastal ecosystems and
include kelp forests and seaweed beds that support a wide diversity of marine life. Host …
include kelp forests and seaweed beds that support a wide diversity of marine life. Host …
A step towards validation of high-throughput sequencing for the identification of plant pathogenic oomycetes
AS Espindola, K Cardwell, FN Martin… - …, 2022 - Am Phytopath Society
The advancement in high-throughput sequencing (HTS) technology allows the detection of
pathogens without the need for isolation or template amplification. Plant regulatory agencies …
pathogens without the need for isolation or template amplification. Plant regulatory agencies …
TASPERT: Target-specific reverse transcript pools to improve HTS plant virus diagnostics
AS Espindola, D Sempertegui-Bayas, DF Bravo-Padilla… - Viruses, 2021 - mdpi.com
High-throughput sequencing (HTS) is becoming the new norm of diagnostics in plant
quarantine settings. HTS can be used to detect, in theory, all pathogens present in any given …
quarantine settings. HTS can be used to detect, in theory, all pathogens present in any given …
Microbe Finder (MiFi®): Implementation of an Interactive Pathogen Detection Tool in Metagenomic Sequence Data
AS Espindola, KF Cardwell - Plants, 2021 - mdpi.com
Agricultural high throughput diagnostics need to be fast, accurate and have multiplexing
capacity. Metagenomic sequencing is being widely evaluated for plant and animal …
capacity. Metagenomic sequencing is being widely evaluated for plant and animal …
Detection of Phytophthora, Pythium, Globisporangium, Hyaloperonospora, and Plasmopara Species in High-Throughput Sequencing Data by In Silico and In Vitro …
F Proaño-Cuenca, AS Espindola… - PhytoFrontiers …, 2023 - Am Phytopath Society
Species identification of plant pathogenic oomycetes based on morphology is challenging
because of the limited number of variable characters available. Hence, pure culture isolation …
because of the limited number of variable characters available. Hence, pure culture isolation …
Aspergillus Metabolome Database for Mass Spectrometry Metabolomics
A Gil-De-La-Fuente, M Mamani-Huanca, MC Stroe… - Journal of Fungi, 2021 - mdpi.com
The Aspergillus Metabolome Database is a free online resource to perform metabolite
annotation in mass spectrometry studies devoted to the genus Aspergillus. The database …
annotation in mass spectrometry studies devoted to the genus Aspergillus. The database …
Aspergillus flavus NRRL 35739, a Poor Biocontrol Agent, May Have Increased Relative Expression of Stress Response Genes
KK Pennerman, G Yin, JW Bennett, SST Hua - Journal of Fungi, 2019 - mdpi.com
Biocontrol of the mycotoxin aflatoxin utilizes non-aflatoxigenic strains of Aspergillus flavus,
which have variable success rates as biocontrol agents. One non-aflatoxigenic strain, NRRL …
which have variable success rates as biocontrol agents. One non-aflatoxigenic strain, NRRL …
Training, tests, and tech: Deployment of diagnostic tools for biosecurity
CL Harmon, BL Akey, FM Ochoa-Corona… - Tactical Sciences for …, 2022 - igi-global.com
Diagnosis of disease is a process of hypothesis, investigation, and synthesis. Regardless of
whether a human, animal, or plant is afflicted, the process of diagnosis is strikingly similar …
whether a human, animal, or plant is afflicted, the process of diagnosis is strikingly similar …