Glucocorticoid-mediated developmental programming of vertebrate stress responsivity
IM Gans, JA Coffman - Frontiers in Physiology, 2021 - frontiersin.org
Glucocorticoids, vertebrate steroid hormones produced by cells of the adrenal cortex or
interrenal tissue, function dynamically to maintain homeostasis under constantly changing …
interrenal tissue, function dynamically to maintain homeostasis under constantly changing …
[HTML][HTML] New concepts in feedback regulation of glucose metabolism
JW Locasale - Current opinion in systems biology, 2018 - Elsevier
Glycolysis, the breakdown of glucose, is one of the most conserved and extensively studied
biochemical pathways. Designing principles from chemistry and thermodynamics allow for …
biochemical pathways. Designing principles from chemistry and thermodynamics allow for …
Loss of Krüppel-like factor 9 deregulates both physiological gene expression and development
L Drepanos, IM Gans, J Grendler, S Guitar… - Scientific Reports, 2023 - nature.com
Krüppel-like factor 9 (Klf9) is a ubiquitously expressed transcription factor that is a
feedforward regulator of multiple stress-responsive and endocrine signaling pathways. We …
feedforward regulator of multiple stress-responsive and endocrine signaling pathways. We …
Standardized excitable elements for scalable engineering of far-from-equilibrium chemical networks
SW Schaffter, KL Chen, J O'Brien, M Noble… - Nature Chemistry, 2022 - nature.com
Engineered far-from-equilibrium synthetic chemical networks that pulse or switch states in
response to environmental signals could precisely regulate the kinetics of chemical …
response to environmental signals could precisely regulate the kinetics of chemical …
Computational modeling reveals frequency modulation of calcium-cAMP/PKA pathway in dendritic spines
Dendritic spines are the primary excitatory postsynaptic sites that act as subcompartments of
signaling. Ca 2+ is often the first and most rapid signal in spines. Downstream of calcium …
signaling. Ca 2+ is often the first and most rapid signal in spines. Downstream of calcium …
Elements of biological oscillations in time and space
Oscillations in time and space are ubiquitous in nature and play critical roles in dynamic
cellular processes. Although the molecular mechanisms underlying the generation of the …
cellular processes. Although the molecular mechanisms underlying the generation of the …
An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states
In higher plants (eg, Arabidopsis thaliana), the core structure of the circadian clock is mostly
governed by a repression process with very few direct activators. With a series of simplified …
governed by a repression process with very few direct activators. With a series of simplified …
Late-arriving signals contribute less to cell-fate decisions
Gene regulatory networks are largely responsible for cellular decision-making. These
networks sense diverse external signals and respond by adjusting gene expression …
networks sense diverse external signals and respond by adjusting gene expression …
[HTML][HTML] Synthetic designs regulating cellular transitions: fine-tuning of switches and oscillators
Biological circuits are responsible for transitions between cellular states in a timely fashion.
For example, stem cells switch from an undifferentiated (unstable) state to a differentiated …
For example, stem cells switch from an undifferentiated (unstable) state to a differentiated …
Cyclin/Forkhead-mediated coordination of cyclin waves: an autonomous oscillator rationalizing the quantitative model of Cdk control for budding yeast
M Barberis - NPJ systems biology and applications, 2021 - nature.com
Networks of interacting molecules organize topology, amount, and timing of biological
functions. Systems biology concepts required to pin down 'network motifs' or 'design …
functions. Systems biology concepts required to pin down 'network motifs' or 'design …