Glucocorticoid-mediated developmental programming of vertebrate stress responsivity

IM Gans, JA Coffman - Frontiers in Physiology, 2021 - frontiersin.org
Glucocorticoids, vertebrate steroid hormones produced by cells of the adrenal cortex or
interrenal tissue, function dynamically to maintain homeostasis under constantly changing …

[HTML][HTML] New concepts in feedback regulation of glucose metabolism

JW Locasale - Current opinion in systems biology, 2018 - Elsevier
Glycolysis, the breakdown of glucose, is one of the most conserved and extensively studied
biochemical pathways. Designing principles from chemistry and thermodynamics allow for …

Loss of Krüppel-like factor 9 deregulates both physiological gene expression and development

L Drepanos, IM Gans, J Grendler, S Guitar… - Scientific Reports, 2023 - nature.com
Krüppel-like factor 9 (Klf9) is a ubiquitously expressed transcription factor that is a
feedforward regulator of multiple stress-responsive and endocrine signaling pathways. We …

Standardized excitable elements for scalable engineering of far-from-equilibrium chemical networks

SW Schaffter, KL Chen, J O'Brien, M Noble… - Nature Chemistry, 2022 - nature.com
Engineered far-from-equilibrium synthetic chemical networks that pulse or switch states in
response to environmental signals could precisely regulate the kinetics of chemical …

Computational modeling reveals frequency modulation of calcium-cAMP/PKA pathway in dendritic spines

D Ohadi, DL Schmitt, B Calabrese, S Halpain, J Zhang… - Biophysical journal, 2019 - cell.com
Dendritic spines are the primary excitatory postsynaptic sites that act as subcompartments of
signaling. Ca 2+ is often the first and most rapid signal in spines. Downstream of calcium …

Elements of biological oscillations in time and space

Y Cao, A Lopatkin, L You - Nature Structural & Molecular Biology, 2016 - nature.com
Oscillations in time and space are ubiquitous in nature and play critical roles in dynamic
cellular processes. Although the molecular mechanisms underlying the generation of the …

An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states

I Joanito, JW Chu, SH Wu, CP Hsu - Scientific reports, 2018 - nature.com
In higher plants (eg, Arabidopsis thaliana), the core structure of the circadian clock is mostly
governed by a repression process with very few direct activators. With a series of simplified …

Late-arriving signals contribute less to cell-fate decisions

MG Cortes, JT Trinh, L Zeng, G Balázsi - Biophysical journal, 2017 - cell.com
Gene regulatory networks are largely responsible for cellular decision-making. These
networks sense diverse external signals and respond by adjusting gene expression …

[HTML][HTML] Synthetic designs regulating cellular transitions: fine-tuning of switches and oscillators

I Zorzan, AR López, A Malyshava, T Ellis… - Current Opinion in …, 2021 - Elsevier
Biological circuits are responsible for transitions between cellular states in a timely fashion.
For example, stem cells switch from an undifferentiated (unstable) state to a differentiated …

Cyclin/Forkhead-mediated coordination of cyclin waves: an autonomous oscillator rationalizing the quantitative model of Cdk control for budding yeast

M Barberis - NPJ systems biology and applications, 2021 - nature.com
Networks of interacting molecules organize topology, amount, and timing of biological
functions. Systems biology concepts required to pin down 'network motifs' or 'design …