[HTML][HTML] Towards robot scientists for autonomous scientific discovery

A Sparkes, W Aubrey, E Byrne, A Clare… - Automated …, 2010 - Springer
We review the main components of autonomous scientific discovery, and how they lead to
the concept of a Robot Scientist. This is a system which uses techniques from artificial …

Biomedical ontologies—A review

BM Konopka - Biocybernetics and Biomedical Engineering, 2015 - Elsevier
Current societies undergo a transformation into information societies.“Digitialization” is
progressing in every aspect of life, including health care. Handling the increasing flow of …

OntoDM: An ontology of data mining

P Panov, S Džeroski, L Soldatova - 2008 IEEE International …, 2008 - ieeexplore.ieee.org
Motivated by the need for unification of the field of data mining and the growing demand for
formalized representation of outcomes of research, we address the task of constructing an …

[HTML][HTML] Biocoder: A programming language for standardizing and automating biology protocols

V Ananthanarayanan, W Thies - Journal of biological engineering, 2010 - Springer
Background Published descriptions of biology protocols are often ambiguous and
incomplete, making them difficult to replicate in other laboratories. However, there is …

Minimum information for dielectric measurements of biological tissues (MINDER): A framework for repeatable and reusable data

E Porter, A La Gioia, S Salahuddin… - … Journal of RF and …, 2018 - Wiley Online Library
The dielectric properties of biological tissues characterise the interaction of human tissues
with electromagnetic (EM) fields. Accurate knowledge of the dielectric properties of tissues …

Testing the reproducibility and robustness of the cancer biology literature by robot

K Roper, A Abdel-Rehim… - Journal of the …, 2022 - royalsocietypublishing.org
Scientific results should not just be 'repeatable'(replicable in the same laboratory under
identical conditions), but also 'reproducible'(replicable in other laboratories under similar …

BioScript: Programming safe chemistry on laboratories-on-a-chip

J Ott, T Loveless, C Curtis, M Lesani… - Proceedings of the ACM on …, 2018 - dl.acm.org
This paper introduces BioScript, a domain-specific language (DSL) for programmable
biochemistry which executes on emerging microfluidic platforms. The goal of this research is …

[HTML][HTML] EXACT2: the semantics of biomedical protocols

LN Soldatova, D Nadis, RD King, PS Basu, E Haddi… - BMC …, 2014 - Springer
Background The reliability and reproducibility of experimental procedures is a cornerstone
of scientific practice. There is a pressing technological need for the better representation of …

Automated planning enables complex protocols on liquid-handling robots

E Whitehead, F Rudolf, HM Kaltenbach… - ACS synthetic …, 2018 - ACS Publications
Robotic automation in synthetic biology is especially relevant for liquid handling to facilitate
complex experiments. However, research tasks that are not highly standardized are still …

Guidelines for the reuse of ontology content

M Halper, LN Soldatova, M Brochhausen… - Applied …, 2023 - content.iospress.com
Reuse of elements from existing ontologies in the construction of new ontologies is a
foundational principle in ontological design. It offers the benefits, among others, of …