Analysing proteomic data

J Barrett, PM Brophy, JV Hamilton - International Journal for Parasitology, 2005 - Elsevier
The rapid growth of proteomics has been made possible by the development of reproducible
2D gels and biological mass spectrometry. However, despite technical improvements 2D …

Elastic registration of biological images using vector-spline regularization

COS Sorzano, P Thévenaz… - IEEE transactions on …, 2005 - ieeexplore.ieee.org
We present an elastic registration algorithm for the alignment of biological images. Our
method combines and extends some of the best techniques available in the context of …

Comparative proteomic analysis of mammalian animal tissues and body fluids: bovine proteome database

C D'Ambrosio, S Arena, F Talamo, L Ledda… - … of chromatography B, 2005 - Elsevier
Characterizing the complete proteome of multicellular organisms is a challenging task using
the currently available technologies. With the increasing degree of genetic complexity …

Using standard positions and image fusion to create proteome maps from collections of two‐dimensional gel electrophoresis images

S Luhn, M Berth, M Hecker… - PROTEOMICS …, 2003 - Wiley Online Library
Databases for two‐dimensional protein gels pose new challenges in extracting meaningful
information from large numbers of experiments. In order to create expression profiles …

Method for triggering events in a video

E Shaburova, V Shaburov - US Patent 11,443,772, 2022 - Google Patents
A computer implemented method of triggering events in a video, the method comprising:
providing a list of objects with their states and corresponding events in video such that each …

Comparison of PDQuest and Progenesis software packages in the analysis of two‐dimensional electrophoresis gels

AT Rosengren, JM Salmi, T Aittokallio… - …, 2003 - Wiley Online Library
Efficient analysis of protein expression by using two‐dimensional electrophoresis (2‐DE)
data relies on the use of automated image processing techniques. The overall success of …

Start-to-end processing of two-dimensional gel electrophoretic images

M Daszykowski, I Stanimirova… - … of Chromatography A, 2007 - Elsevier
Gel electrophoresis serves as a basic analytical tool in the proteomic studies. However,
processing of gel electrophoretic images is still the main bottleneck of data analysis, and …

An image analysis suite for spot detection and spot matching in two‐dimensional electrophoresis gels

T Srinark, C Kambhamettu - Electrophoresis, 2008 - Wiley Online Library
We propose a suite of novel algorithms for image analysis of protein expression images
obtained from 2‐D electrophoresis. These algorithms are a segmentation algorithm for …

Quantitative evaluation of sample application methods for semipreparative separations of basic proteins by two‐dimensional gel electrophoresis

RC Barry, BL Alsaker, JF Robison‐Cox… - Electrophoresis, 2003 - Wiley Online Library
The use of cup‐loading for sample application has become widely used in two‐dimensional
electrophoresis (2‐DE) for resolution of basic proteins, but no side‐by‐side quantitative …

Geometrical distortions in two-dimensional gels: applicable correction methods

T Aittokallio, J Salmi, TA Nyman… - … of Chromatography B, 2005 - Elsevier
Two-dimensional electrophoresis (2-DE) provides a rapid means for separating thousands
of proteins from cell and tissue samples in one run. Although this powerful research tool has …