Mechanisms of enhancer action: the known and the unknown
A Panigrahi, BW O'Malley - Genome biology, 2021 - Springer
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
The origin of Metazoa: a unicellular perspective
The first animals evolved from an unknown single-celled ancestor in the Precambrian
period. Recently, the identification and characterization of the genomic and cellular traits of …
period. Recently, the identification and characterization of the genomic and cellular traits of …
Enhancer evolution across 20 mammalian species
The mammalian radiation has corresponded with rapid changes in noncoding regions of the
genome, but we lack a comprehensive understanding of regulatory evolution in mammals …
genome, but we lack a comprehensive understanding of regulatory evolution in mammals …
Cnidarian cell type diversity and regulation revealed by whole-organism single-cell RNA-Seq
A Sebé-Pedrós, B Saudemont, E Chomsky, F Plessier… - Cell, 2018 - cell.com
The emergence and diversification of cell types is a leading factor in animal evolution. So
far, systematic characterization of the gene regulatory programs associated with cell type …
far, systematic characterization of the gene regulatory programs associated with cell type …
Deep conservation of the enhancer regulatory code in animals
INTRODUCTION In animals, gene regulatory networks specify cell identity in space and
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …
Topological structures and syntenic conservation in sea anemone genomes
There is currently little information about the evolution of gene clusters, genome
architectures and karyotypes in early branching animals. Slowly evolving anthozoan …
architectures and karyotypes in early branching animals. Slowly evolving anthozoan …
[HTML][HTML] Single-cell transcriptomics identifies conserved regulators of neuroglandular lineages
J Steger, AG Cole, A Denner, T Lebedeva… - Cell Reports, 2022 - cell.com
Communication in bilaterian nervous systems is mediated by electrical and secreted signals;
however, the evolutionary origin and relation of neurons to other secretory cell types has not …
however, the evolutionary origin and relation of neurons to other secretory cell types has not …
Non-model model organisms
JJ Russell, JA Theriot, P Sood, WF Marshall… - BMC biology, 2017 - Springer
Abstract Model organisms are widely used in research as accessible and convenient
systems to study a particular area or question in biology. Traditionally only a handful of …
systems to study a particular area or question in biology. Traditionally only a handful of …
A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state
JF Cazet, S Siebert, HM Little, P Bertemes… - Genome …, 2023 - genome.cshlp.org
The epithelial and interstitial stem cells of the freshwater polyp Hydra are the best-
characterized stem cell systems in any cnidarian, providing valuable insight into cell type …
characterized stem cell systems in any cnidarian, providing valuable insight into cell type …
[HTML][HTML] Understanding'non-genetic'inheritance: insights from molecular-evolutionary crosstalk
I Adrian-Kalchhauser, SE Sultan, LNS Shama… - Trends in ecology & …, 2020 - cell.com
Understanding the evolutionary and ecological roles of'non-genetic'inheritance (NGI) is
daunting due to the complexity and diversity of epigenetic mechanisms. We draw on insights …
daunting due to the complexity and diversity of epigenetic mechanisms. We draw on insights …