Mechanisms of enhancer action: the known and the unknown

A Panigrahi, BW O'Malley - Genome biology, 2021 - Springer
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …

The origin of Metazoa: a unicellular perspective

A Sebé-Pedrós, BM Degnan, I Ruiz-Trillo - Nature Reviews Genetics, 2017 - nature.com
The first animals evolved from an unknown single-celled ancestor in the Precambrian
period. Recently, the identification and characterization of the genomic and cellular traits of …

Enhancer evolution across 20 mammalian species

D Villar, C Berthelot, S Aldridge, TF Rayner, M Lukk… - Cell, 2015 - cell.com
The mammalian radiation has corresponded with rapid changes in noncoding regions of the
genome, but we lack a comprehensive understanding of regulatory evolution in mammals …

Cnidarian cell type diversity and regulation revealed by whole-organism single-cell RNA-Seq

A Sebé-Pedrós, B Saudemont, E Chomsky, F Plessier… - Cell, 2018 - cell.com
The emergence and diversification of cell types is a leading factor in animal evolution. So
far, systematic characterization of the gene regulatory programs associated with cell type …

Deep conservation of the enhancer regulatory code in animals

ES Wong, D Zheng, SZ Tan, NI Bower, V Garside… - Science, 2020 - science.org
INTRODUCTION In animals, gene regulatory networks specify cell identity in space and
time. Transcription of genes in these networks is modulated by a class of cis-regulatory …

Topological structures and syntenic conservation in sea anemone genomes

B Zimmermann, JD Montenegro, SMC Robb… - Nature …, 2023 - nature.com
There is currently little information about the evolution of gene clusters, genome
architectures and karyotypes in early branching animals. Slowly evolving anthozoan …

[HTML][HTML] Single-cell transcriptomics identifies conserved regulators of neuroglandular lineages

J Steger, AG Cole, A Denner, T Lebedeva… - Cell Reports, 2022 - cell.com
Communication in bilaterian nervous systems is mediated by electrical and secreted signals;
however, the evolutionary origin and relation of neurons to other secretory cell types has not …

Non-model model organisms

JJ Russell, JA Theriot, P Sood, WF Marshall… - BMC biology, 2017 - Springer
Abstract Model organisms are widely used in research as accessible and convenient
systems to study a particular area or question in biology. Traditionally only a handful of …

A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state

JF Cazet, S Siebert, HM Little, P Bertemes… - Genome …, 2023 - genome.cshlp.org
The epithelial and interstitial stem cells of the freshwater polyp Hydra are the best-
characterized stem cell systems in any cnidarian, providing valuable insight into cell type …

[HTML][HTML] Understanding'non-genetic'inheritance: insights from molecular-evolutionary crosstalk

I Adrian-Kalchhauser, SE Sultan, LNS Shama… - Trends in ecology & …, 2020 - cell.com
Understanding the evolutionary and ecological roles of'non-genetic'inheritance (NGI) is
daunting due to the complexity and diversity of epigenetic mechanisms. We draw on insights …