Epistasis in protein evolution

TN Starr, JW Thornton - Protein science, 2016 - Wiley Online Library
The structure, function, and evolution of proteins depend on physical and genetic
interactions among amino acids. Recent studies have used new strategies to explore the …

Causes of molecular convergence and parallelism in protein evolution

JF Storz - Nature Reviews Genetics, 2016 - nature.com
To what extent is the convergent evolution of protein function attributable to convergent or
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …

Stability-mediated epistasis constrains the evolution of an influenza protein

LI Gong, MA Suchard, JD Bloom - Elife, 2013 - elifesciences.org
John Maynard Smith compared protein evolution to the game where one word is converted
into another a single letter at a time, with the constraint that all intermediates are words …

Biophysics of protein evolution and evolutionary protein biophysics

T Sikosek, HS Chan - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
The study of molecular evolution at the level of protein-coding genes often entails comparing
large datasets of sequences to infer their evolutionary relationships. Despite the importance …

Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes

RA Studer, BH Dessailly, CA Orengo - Biochemical journal, 2013 - portlandpress.com
The present review focuses on the evolution of proteins and the impact of amino acid
mutations on function from a structural perspective. Proteins evolve under the law of natural …

Addressing epistasis in the design of protein function

R Lipsh-Sokolik, SJ Fleishman - Proceedings of the National Academy of …, 2024 - pnas.org
Mutations in protein active sites can dramatically improve function. The active site, however,
is densely packed and extremely sensitive to mutations. Therefore, some mutations may …

Genes, mutations, and human inherited disease at the dawn of the age of personalized genomics

DN Cooper, JM Chen, EV Ball, K Howells… - Human …, 2010 - Wiley Online Library
The number of reported germline mutations in human nuclear genes, either underlying or
associated with inherited disease, has now exceeded 100,000 in more than 3,700 different …

[图书][B] Hemoglobin: insights into protein structure, function, and evolution

JF Storz - 2018 - books.google.com
The primary aim of this book is to provide a synthesis of our current understanding of
hemoglobin function and evolution, and to illustrate how research on one particular family of …

Compensatory mutations and epistasis for protein function

JF Storz - Current opinion in structural biology, 2018 - Elsevier
Highlights•Adaptive protein evolution may be facilitated by conditionally neutral
mutations.•Mutations can have different effects on different genetic backgrounds.• …

[图书][B] Mitonuclear ecology

GE Hill - 2019 - books.google.com
This novel text provides a concise synthesis of how the interactions between mitochondrial
and nuclear genes have played a major role in shaping the ecology and evolution of …