Proteome complexity and the forces that drive proteome imbalance

JW Harper, EJ Bennett - Nature, 2016 - nature.com
The cellular proteome is a complex microcosm of structural and regulatory networks that
requires continuous surveillance and modification to meet the dynamic needs of the cell. It is …

Post-translational modifications of Hsp70 family proteins: Expanding the chaperone code

CM Porter, AW Truman, MC Truttmann - Journal of Biological Chemistry, 2020 - ASBMB
Cells must be able to cope with the challenge of folding newly synthesized proteins and
refolding those that have become misfolded in the context of a crowded cytosol. One such …

Context-dependent and disease-specific diversity in protein interactions within stress granules

S Markmiller, S Soltanieh, KL Server, R Mak, W Jin… - Cell, 2018 - cell.com
Stress granules (SGs) are transient ribonucleoprotein (RNP) aggregates that form during
cellular stress and are increasingly implicated in human neurodegeneration. To study the …

ZNF598 and RACK1 regulate mammalian ribosome-associated quality control function by mediating regulatory 40S ribosomal ubiquitylation

E Sundaramoorthy, M Leonard, R Mak, J Liao… - Molecular cell, 2017 - cell.com
Ribosomes that experience terminal stalls during translation are resolved by ribosome-
associated quality control (QC) pathways that oversee mRNA and nascent chain destruction …

K63 ubiquitylation triggers proteasomal degradation by seeding branched ubiquitin chains

F Ohtake, H Tsuchiya, Y Saeki… - Proceedings of the …, 2018 - National Acad Sciences
Different polyubiquitin chain linkages direct substrates toward distinct cellular pathways. K63-
linked ubiquitylation is known to regulate proteasome-independent events such as signal …

PD-1 and BTLA regulate T cell signaling differentially and only partially through SHP1 and SHP2

X Xu, B Hou, A Fulzele, T Masubuchi, Y Zhao… - Journal of Cell …, 2020 - rupress.org
Blockade antibodies of the immunoinhibitory receptor PD-1 can stimulate the anti-tumor
activity of T cells, but clinical benefit is limited to a fraction of patients. Evidence suggests that …

Killing by degradation: regulation of apoptosis by the ubiquitin-proteasome-system

R Abbas, S Larisch - Cells, 2021 - mdpi.com
Apoptosis is a cell suicide process that is essential for development, tissue homeostasis and
human health. Impaired apoptosis is associated with a variety of human diseases, including …

Site-specific identification and quantitation of endogenous SUMO modifications under native conditions

RJ Lumpkin, H Gu, Y Zhu, M Leonard… - Nature …, 2017 - nature.com
Small ubiquitin-like modifier (SUMO) modification regulates numerous cellular processes.
Unlike ubiquitin, detection of endogenous SUMOylated proteins is limited by the lack of …

Rapid and deep-scale ubiquitylation profiling for biology and translational research

ND Udeshi, DC Mani, S Satpathy, S Fereshetian… - Nature …, 2020 - nature.com
Protein ubiquitylation is involved in a plethora of cellular processes. While antibodies
directed at ubiquitin remnants (K-ɛ-GG) have improved the ability to monitor ubiquitylation …

Quantitative analysis of the brain ubiquitylome in Alzheimer's disease

MH Abreha, EB Dammer, L Ping, T Zhang… - …, 2018 - Wiley Online Library
Several neurodegenerative diseases including Alzheimer's Disease (AD) are characterized
by ubiquitin‐positive pathological protein aggregates. Here, an immunoaffinity approach is …