[HTML][HTML] Practical considerations in screening for genetic alterations in cholangiocarcinoma

TS Bekaii-Saab, J Bridgewater, N Normanno - Annals of Oncology, 2021 - Elsevier
Cholangiocarcinoma (CCA) encompasses diverse epithelial tumors historically associated
with poor outcomes due to an aggressive disease course, late diagnosis, and limited benefit …

[HTML][HTML] Conserved pan-cancer microenvironment subtypes predict response to immunotherapy

A Bagaev, N Kotlov, K Nomie, V Svekolkin, A Gafurov… - Cancer cell, 2021 - cell.com
The clinical use of molecular targeted therapy is rapidly evolving but has primarily focused
on genomic alterations. Transcriptomic analysis offers an opportunity to dissect the …

Mature tertiary lymphoid structures predict immune checkpoint inhibitor efficacy in solid tumors independently of PD-L1 expression

L Vanhersecke, M Brunet, JP Guégan, C Rey… - Nature cancer, 2021 - nature.com
Only a minority of patients derive long-term clinical benefit from anti-programmed cell death
protein 1 (anti-PD-1) or anti-programmed death-ligand 1 (anti-PD-L1) monoclonal …

RNA sequencing for research and diagnostics in clinical oncology

A Buzdin, M Sorokin, A Garazha, A Glusker… - Seminars in cancer …, 2020 - Elsevier
Molecular diagnostics is becoming one of the major drivers of personalized oncology. With
hundreds of different approved anticancer drugs and regimens of their administration …

Circulating L-arginine predicts the survival of cancer patients treated with immune checkpoint inhibitors

F Peyraud, JP Guégan, D Bodet, I Nafia, L Fontan… - Annals of …, 2022 - Elsevier
Background The discovery of immune checkpoint inhibitors (ICIs) has revolutionized the
systemic approach to cancer treatment. Most patients receiving ICIs, however, do not derive …

Integrated genomic analyses of hepatocellular carcinoma

YS Chang, SJ Tu, HD Chen, MH Hsu, YC Chen… - Hepatology …, 2023 - Springer
Background Genomic alterations play important roles in the development of cancer. We
explored the impact of protein-coding genes and transcriptomic changes on clinical and …

A robust electrochemical immunosensor based on core–shell nanostructured silica-coated silver for cancer (carcinoembryonic-antigen-CEA) diagnosis

P Singh, PK Katkar, UM Patil, RA Bohara - RSC advances, 2021 - pubs.rsc.org
This work addresses the fabrication of an efficient, novel, and economically viable
immunosensing armamentarium that will detect the carcinoembryonic antigen (CEA) …

Genome sequence assembly algorithms and misassembly identification methods

Y Meng, Y Lei, J Gao, Y Liu, E Ma, Y Ding, Y Bian… - Molecular biology …, 2022 - Springer
The sequence assembly algorithms have rapidly evolved with the vigorous growth of
genome sequencing technology over the past two decades. Assembly mainly uses the …

Gene fusion identification using anchor-based multiplex PCR and next-generation sequencing

YW Cheng, A Meyer, MA Jakubowski… - The Journal of …, 2021 - academic.oup.com
Background Methods for identifying gene fusion events, such as fluorescence in situ
hybridization (FISH), immunohistochemistry (IHC), and transcriptome analysis, are either …

[HTML][HTML] Effects of BRD4 inhibitor JQ1 on the expression profile of super-enhancer related lncRNAs and mRNAs in cervical cancer HeLa cells

J Zheng, B Huang, L Xiao, M Wu - PeerJ, 2024 - peerj.com
Objective To investigate the effects of bromine domain protein 4 (BRD4) inhibitor JQ1 on the
expression profile of super-enhancer-related lncRNAs (SE-lncRNAs) and mRNAs in cervical …