Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding
Crop populations derived from experimental crosses enable the genetic dissection of
complex traits and support modern plant breeding. Among these, multi-parent populations …
complex traits and support modern plant breeding. Among these, multi-parent populations …
Exploring and exploiting pan-genomics for crop improvement
Genetic variation ranging from single-nucleotide polymorphisms to large structural variants
(SVs) can cause variation of gene content among individuals within the same species. There …
(SVs) can cause variation of gene content among individuals within the same species. There …
Graph pangenome captures missing heritability and empowers tomato breeding
Missing heritability in genome-wide association studies defines a major problem in genetic
analyses of complex biological traits,. The solution to this problem is to identify all causal …
analyses of complex biological traits,. The solution to this problem is to identify all causal …
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …
present a tomato pan-genome constructed using genome sequences of 725 …
Toward an evolved concept of landrace
The term “landrace” has generally been defined as a cultivated, genetically heterogeneous
variety that has evolved in a certain ecogeographical area and is therefore adapted to the …
variety that has evolved in a certain ecogeographical area and is therefore adapted to the …
Trait discovery and editing in tomato
Tomato (Solanum lycopersicum), which is used for both processing and fresh markets, is a
major crop species that is the top ranked vegetable produced over the world. Tomato is also …
major crop species that is the top ranked vegetable produced over the world. Tomato is also …
[HTML][HTML] Tackling the climate, biodiversity and pollution emergencies by making peace with nature 50 years after the Stockholm Conference
IA Baste, RT Watson - Global Environmental Change, 2022 - Elsevier
Today's increasingly unequal and resource intensive development model degrades and
surpasses Earth's finite capacity to sustain human well-being. Society must restore this …
surpasses Earth's finite capacity to sustain human well-being. Society must restore this …
Succinct de Bruijn graphs
A Bowe, T Onodera, K Sadakane, T Shibuya - International workshop on …, 2012 - Springer
We propose a new succinct de Bruijn graph representation. If the de Bruijn graph of k-mers
in a DNA sequence of length N has m edges, it can be represented in 4 m+ o (m) bits. This is …
in a DNA sequence of length N has m edges, it can be represented in 4 m+ o (m) bits. This is …
Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Advances in omics approaches for abiotic stress tolerance in tomato
Tomato, one of the most important crops worldwide, has a high demand in the fresh fruit
market and processed food industries. Despite having considerably high productivity …
market and processed food industries. Despite having considerably high productivity …