Metagenomics and future perspectives in virus discovery
Monitoring the emergence and re-emergence of viral diseases with the goal of containing
the spread of viral agents requires both adequate preparedness and quick response …
the spread of viral agents requires both adequate preparedness and quick response …
Worlds within worlds: evolution of the vertebrate gut microbiota
In this Analysis we use published 16S ribosomal RNA gene sequences to compare the
bacterial assemblages that are associated with humans and other mammals, metazoa and …
bacterial assemblages that are associated with humans and other mammals, metazoa and …
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
M Hamady, C Lozupone, R Knight - The ISME journal, 2010 - academic.oup.com
Next-generation sequencing techniques, and PhyloChip, have made simultaneous
phylogenetic analyses of hundreds of microbial communities possible. Insight into …
phylogenetic analyses of hundreds of microbial communities possible. Insight into …
Marine viruses: truth or dare
M Breitbart - Annual review of marine science, 2012 - annualreviews.org
Over the past two decades, marine virology has progressed from a curiosity to an intensely
studied topic of critical importance to oceanography. At concentrations of approximately 10 …
studied topic of critical importance to oceanography. At concentrations of approximately 10 …
Laboratory procedures to generate viral metagenomes
This collection of laboratory protocols describes the steps to collect viruses from various
samples with the specific aim of generating viral metagenome sequence libraries (viromes) …
samples with the specific aim of generating viral metagenome sequence libraries (viromes) …
Viruses manipulate the marine environment
F Rohwer, RV Thurber - Nature, 2009 - nature.com
Abstract Marine viruses affect Bacteria, Archaea and eukaryotic organisms and are major
components of the marine food web. Most studies have focused on their role as predators …
components of the marine food web. Most studies have focused on their role as predators …
Expanding the RNA virosphere by unbiased metagenomics
YZ Zhang, YM Chen, W Wang, XC Qin… - Annual Review of …, 2019 - annualreviews.org
Although viruses comprise the most abundant genetic material in the biosphere, to date only
several thousand virus species have been formally defined. Such a limited perspective on …
several thousand virus species have been formally defined. Such a limited perspective on …
Predicting virus emergence amid evolutionary noise
JL Geoghegan, EC Holmes - Open biology, 2017 - royalsocietypublishing.org
The study of virus disease emergence, whether it can be predicted and how it might be
prevented, has become a major research topic in biomedicine. Here we show that efforts to …
prevented, has become a major research topic in biomedicine. Here we show that efforts to …
Viral and microbial community dynamics in four aquatic environments
B Rodriguez-Brito, LL Li, L Wegley, M Furlan… - The ISME …, 2010 - academic.oup.com
The species composition and metabolic potential of microbial and viral communities are
predictable and stable for most ecosystems. This apparent stability contradicts theoretical …
predictable and stable for most ecosystems. This apparent stability contradicts theoretical …
High diversity of the viral community from an Antarctic lake
Viruses are the most abundant biological entities and can control microbial communities, but
their identity in terrestrial and freshwater Antarctic ecosystems is unknown. The genetic …
their identity in terrestrial and freshwater Antarctic ecosystems is unknown. The genetic …