[HTML][HTML] Best practices for variant calling in clinical sequencing

DC Koboldt - Genome Medicine, 2020 - Springer
Next-generation sequencing technologies have enabled a dramatic expansion of clinical
genetic testing both for inherited conditions and diseases such as cancer. Accurate variant …

[HTML][HTML] Genomic instability of iPSCs: challenges towards their clinical applications

M Yoshihara, Y Hayashizaki, Y Murakawa - Stem cell reviews and reports, 2017 - Springer
Induced pluripotent stem cells (iPSCs) are a type of pluripotent stem cells generated directly
from mature cells through the introduction of key transcription factors. iPSCs can be …

[HTML][HTML] Rare variant contribution to human disease in 281,104 UK Biobank exomes

Q Wang, RS Dhindsa, K Carss, AR Harper, A Nag… - Nature, 2021 - nature.com
Genome-wide association studies have uncovered thousands of common variants
associated with human disease, but the contribution of rare variants to common disease …

Integrating mapping-, assembly-and haplotype-based approaches for calling variants in clinical sequencing applications

A Rimmer, H Phan, I Mathieson, Z Iqbal, SRF Twigg… - Nature …, 2014 - nature.com
High-throughput DNA sequencing technology has transformed genetic research and is
starting to make an impact on clinical practice. However, analyzing high-throughput …

Factors influencing success of clinical genome sequencing across a broad spectrum of disorders

JC Taylor, HC Martin, S Lise, J Broxholme, JB Cazier… - Nature …, 2015 - nature.com
To assess factors influencing the success of whole-genome sequencing for mainstream
clinical diagnosis, we sequenced 217 individuals from 156 independent cases or families …

[HTML][HTML] Somatic mutations in cerebral cortical malformations

SS Jamuar, ATN Lam, M Kircher… - … England Journal of …, 2014 - Mass Medical Soc
Background Although there is increasing recognition of the role of somatic mutations in
genetic disorders, the prevalence of somatic mutations in neurodevelopmental disease and …

Somatic mosaicism: implications for disease and transmission genetics

IM Campbell, CA Shaw, P Stankiewicz, JR Lupski - Trends in Genetics, 2015 - cell.com
Nearly all of the genetic material among cells within an organism is identical. However,
single-nucleotide variants (SNVs), small insertions/deletions (indels), copy-number variants …

[HTML][HTML] European guidelines for constitutional cytogenomic analysis

M Silva, N de Leeuw, K Mann… - European Journal of …, 2019 - nature.com
With advancing technology and the consequent shift towards an increasing application of
molecular genetic techniques (eg, microarrays, next-generation sequencing) with the …

Clinical whole-genome sequencing in severe early-onset epilepsy reveals new genes and improves molecular diagnosis

HC Martin, GE Kim, AT Pagnamenta… - Human molecular …, 2014 - academic.oup.com
In severe early-onset epilepsy, precise clinical and molecular genetic diagnosis is complex,
as many metabolic and electro-physiological processes have been implicated in disease …

NGS technologies as a turning point in rare disease research, diagnosis and treatment

A Fernandez-Marmiesse, S Gouveia… - Current medicinal …, 2018 - ingentaconnect.com
Approximately 25-50 million Americans, 30 million Europeans, and 8% of the Australian
population have a rare disease. Rare diseases are thus a common problem for clinicians …