Dosage compensation can buffer copy-number variation in wild yeast

J Hose, CM Yong, M Sardi, Z Wang, MA Newton… - Elife, 2015 - elifesciences.org
Aneuploidy is linked to myriad diseases but also facilitates organismal evolution. It remains
unclear how cells overcome the deleterious effects of aneuploidy until new phenotypes …

Frequent copy number gains at 1q21 and 1q32 are associated with overexpression of the ETS transcription factors ETV3 and ELF3 in breast cancer irrespective of …

B Mesquita, P Lopes, A Rodrigues, D Pereira… - Breast cancer research …, 2013 - Springer
Several ETS transcription factors are involved in the pathogenesis of human cancers by
different mechanisms. As gene copy number gain/amplification is an alternative mechanism …

Nonrandom chromosome abnormalities in cancer: an overview

S Heim, F Mitelman - Cancer Cytogenetics: Chromosomal and …, 2015 - Wiley Online Library
This chapter discusses neoplastic karyotypes. It emphasizes the difference between primary
and secondary changes and address the questions of why, how, when, and where …

Unstable genomes elevate transcriptome dynamics

JB Stevens, G Liu, BY Abdallah… - … journal of cancer, 2014 - Wiley Online Library
The challenge of identifying common expression signatures in cancer is well known,
however the reason behind this is largely unclear. Traditionally variation in expression …

iGC—an integrated analysis package of gene expression and copy number alteration

YP Lai, LB Wang, WA Wang, LC Lai, MH Tsai, TP Lu… - BMC …, 2017 - Springer
Background With the advancement in high-throughput technologies, researchers can
simultaneously investigate gene expression and copy number alteration (CNA) data from …

Reduced folate carrier: an entry receptor for a novel feline leukemia virus variant

A Miyake, J Kawasaki, H Ngo, I Makundi… - Journal of …, 2019 - Am Soc Microbiol
Feline leukemia virus (FeLV) is horizontally transmitted among cats and causes a variety of
hematopoietic disorders. Five subgroups of FeLV, A to D and T, each with distinct receptor …

Inferring gene regulatory relationships with a high‐dimensional robust approach

Y Zang, Q Zhao, Q Zhang, Y Li, S Zhang… - Genetic …, 2017 - Wiley Online Library
Gene expression (GE) levels have important biological and clinical implications. They are
regulated by copy number alterations (CNAs). Modeling the regulatory relationships …

The shaping and functional consequences of the dosage effect landscape in multiple myeloma

MK Samur, PK Shah, X Wang, S Minvielle… - BMC genomics, 2013 - Springer
Background Multiple myeloma (MM) is a malignant proliferation of plasma B cells. Based on
recurrent aneuploidy such as copy number alterations (CNAs), myeloma is divided into two …

Insights into the regulation of human CNV-miRNAs from the view of their target genes

X Wu, D Zhang, G Li - BMC genomics, 2012 - Springer
Background microRNAs (miRNAs) represent a class of small (typically 22 nucleotides in
length) non-coding RNAs that can degrade their target mRNAs or block their translation …

Copy number variation in human health, disease and evolution

C Sismani, C Koufaris, K Voskarides - Genomic Elements in Health …, 2015 - Springer
Human genetic variability can be either alterations in the sequence of the genome or
structural alterations that do not affect the genome sequence. Copy Number Variants (CNV) …