[HTML][HTML] Modelling of microbial interactions in anaerobic digestion: From black to glass box

A Basile, G Zampieri, A Kovalovszki, B Karkaria… - Current Opinion in …, 2023 - Elsevier
Highlights•Anaerobic microbes play a significant role in the global biogeochemical
cycle.•Mathematical models explain anaerobic processes, including bioconversion abilities …

[HTML][HTML] Functional characterization of prokaryotic dark matter: the road so far and what lies ahead

P Escudeiro, CS Henry, RPM Dias - Current Research in Microbial …, 2022 - Elsevier
Eight-hundred thousand to one trillion prokaryotic species may inhabit our planet. Yet, fewer
than two-hundred thousand prokaryotic species have been described. This uncharted …

Bacillus species are core microbiota of resistant maize cultivars that induce host metabolic defense against corn stalk rot

X Xia, Q Wei, H Wu, X Chen, C Xiao, Y Ye, C Liu, H Yu… - Microbiome, 2024 - Springer
Background Microbes colonizing each compartment of terrestrial plants are indispensable
for maintaining crop health. Although corn stalk rot (CSR) is a severe disease affecting …

Severe acute respiratory syndrome Coronavirus-2 GenoAnalyzer and mutagenic anomaly detector using FCMFI and NSCE

S Dubey, DK Verma, M Kumar - International Journal of Biological …, 2024 - Elsevier
In order to deepen our understanding of the virus and help guide the creation of efficient
therapies, this study uses artificial intelligence tools to thoroughly explore the genetic …

Artificial intelligence in omics

F Gao, K Huang, Y Xing - Genomics, Proteomics and …, 2022 - academic.oup.com
Artificial intelligence (AI) is a powerful approach for solving complex problems in the
processing, analysis, and interpretation of omics data, as well as the integration of multi …

[HTML][HTML] Waste to resource: Mining antimicrobial peptides in sludge from metagenomes using machine learning

J Xu, X Xu, Y Jiang, Y Fu, C Shen - Environment International, 2024 - Elsevier
The emergence of antibiotic-resistant bacteria poses a huge threat to the treatment of
infections. Antimicrobial peptides are a class of short peptides that widely exist in organisms …

Modulation of gut microbiome in response to the combination of Escherichia coli Nissle 1917 and sugars: a pilot study using host-free system reflecting impact on …

K Heer, M Kaur, D Sidhu, P Dey… - Frontiers in Nutrition, 2024 - frontiersin.org
Introduction The differential effects of probiotic, prebiotic, and synbiotic formulations on
human health are dictated by the inter-individual gut microbial profile. The effects of …

The potential of including the microbiome as biomarker in population-based health studies: methods and benefits

FE Buytaers, N Berger, J Van der Heyden… - Frontiers in Public …, 2024 - frontiersin.org
The key role of our microbiome in influencing our health status, and its relationship with our
environment and lifestyle or health behaviors, have been shown in the last decades …

A thermophilic chemolithoautotrophic bacterial consortium suggests a mutual relationship between bacteria in extreme oligotrophic environments

Y Pinheiro, F Faria da Mota, RS Peixoto… - Communications …, 2023 - nature.com
A thermophilic, chemolithoautotrophic, and aerobic microbial consortium (termed
carbonitroflex) growing in a nutrient-poor medium and an atmosphere containing N2, O2 …

The microbiome-product colibactin hits unique cellular targets mediating host–microbe interaction

WK Mousa - Frontiers in Pharmacology, 2022 - frontiersin.org
The human microbiota produces molecules that are evolved to interact with the diverse
cellular machinery of both the host and microbes, mediating health and diseases. One of the …