A review of long‐branch attraction
J Bergsten - Cladistics, 2005 - Wiley Online Library
The history of long‐branch attraction, and in particular methods suggested to detect and
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …
Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA
DNA data has been widely used in animal phylogenetic studies over the past 15 years. Here
we review how these studies have used advances in knowledge of molecular evolutionary …
we review how these studies have used advances in knowledge of molecular evolutionary …
[图书][B] Randomization, bootstrap and Monte Carlo methods in biology
BFJ Manly - 2018 - taylorfrancis.com
Modern computer-intensive statistical methods play a key role in solving many problems
across a wide range of scientific disciplines. This new edition of the bestselling …
across a wide range of scientific disciplines. This new edition of the bestselling …
Assembling the squamate tree of life: perspectives from the phenotype and the fossil record
We assembled a dataset of 192 carefully selected species—51 extinct and 141 extant—and
976 apomorphies distributed among 610 phenotypic characters to investigate the phylogeny …
976 apomorphies distributed among 610 phenotypic characters to investigate the phylogeny …
Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
M Anisimova, O Gascuel - Systematic biology, 2006 - academic.oup.com
We revisit statistical tests for branches of evolutionary trees reconstructed upon molecular
data. A new, fast, approximate likelihood-ratio test (aLRT) for branches is presented here as …
data. A new, fast, approximate likelihood-ratio test (aLRT) for branches is presented here as …
Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic …
Abstract Bayesian Markov chain Monte Carlo sampling has become increasingly popular in
phylogenetics as a method for both estimating the maximum likelihood topology and for …
phylogenetics as a method for both estimating the maximum likelihood topology and for …
Phylogeny of Penicillium and the segregation of Trichocomaceae into three families
J Houbraken, RA Samson - Studies in mycology, 2011 - ingentaconnect.com
Species of Trichocomaceae occur commonly and are important to both industry and
medicine. They are associated with food spoilage and mycotoxin production and can occur …
medicine. They are associated with food spoilage and mycotoxin production and can occur …
A phylogeny of legumes (Leguminosae) based on analysis of the plastid matK gene resolves many well‐supported subclades within the family
MF Wojciechowski, M Lavin… - American journal of …, 2004 - Wiley Online Library
Phylogenetic analysis of 330 plastid matK gene sequences, representing 235 genera from
37 of 39 tribes, and four outgroup taxa from eurosids I supports many well‐resolved …
37 of 39 tribes, and four outgroup taxa from eurosids I supports many well‐resolved …
Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models
JP Huelsenbeck, B Rannala - Systematic biology, 2004 - academic.oup.com
What does the posterior probability of a phylogenetic tree mean? This simulation study
shows that Bayesian posterior probabilities have the meaning that is typically ascribed to …
shows that Bayesian posterior probabilities have the meaning that is typically ascribed to …
Quartet sampling distinguishes lack of support from conflicting support in the green plant tree of life
Premise of the Study Phylogenetic support has been difficult to evaluate within the green
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …
plant tree of life partly due to a lack of specificity between conflicted versus poorly informed …