Analyses of Brucella Pathogenesis, Host Immunity, and Vaccine Targets using Systems Biology and Bioinformatics

Y He - Frontiers in cellular and infection microbiology, 2012 - frontiersin.org
Brucella is a Gram-negative, facultative intracellular bacterium that causes zoonotic
brucellosis in humans and various animals. Out of 10 classified Brucella species, B …

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability

Y He, Z Xiang, J Zheng, Y Lin, JA Overton… - Journal of biomedical …, 2018 - Springer
Ontologies are critical to data/metadata and knowledge standardization, sharing, and
analysis. With hundreds of biological and biomedical ontologies developed, it has become …

The ontology for biomedical investigations

A Bandrowski, R Brinkman, M Brochhausen, MH Brush… - PloS one, 2016 - journals.plos.org
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with
precisely defined meanings to describe all aspects of how investigations in the biological …

FoodKG: a semantics-driven knowledge graph for food recommendation

S Haussmann, O Seneviratne, Y Chen… - The Semantic Web …, 2019 - Springer
The proliferation of recipes and other food information on the Web presents an opportunity
for discovering and organizing diet-related knowledge into a knowledge graph. Currently …

CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis

Y He, H Yu, E Ong, Y Wang, Y Liu, A Huffman… - Scientific data, 2020 - nature.com
CIDO, a community-based ontology for coronavirus disease knowledge and data integration,
sharing, and analysis | Scientific Data Skip to main content Thank you for visiting nature.com …

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

AD Diehl, TF Meehan, YM Bradford, MH Brush… - Journal of biomedical …, 2016 - Springer
Abstract Background The Cell Ontology (CL) is an OBO Foundry candidate ontology
covering the domain of canonical, natural biological cell types. Since its inception in 2005 …

ROBOT: a tool for automating ontology workflows

RC Jackson, JP Balhoff, E Douglass, NL Harris… - BMC …, 2019 - Springer
Background Ontologies are invaluable in the life sciences, but building and maintaining
ontologies often requires a challenging number of distinct tasks such as running automated …

Patterns and severity of vincristine‐induced peripheral neuropathy in children with acute lymphoblastic leukemia

EM Lavoie Smith, L Li, CW Chiang… - Journal of the …, 2015 - Wiley Online Library
Vincristine, a critical component of combination chemotherapy treatment for pediatric acute
lymphoblastic leukemia (ALL), can lead to vincristine‐induced peripheral neuropathy …

Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration

E Ong, Z Xiang, B Zhao, Y Liu, Y Lin… - Nucleic acids …, 2017 - academic.oup.com
Linked Data (LD) aims to achieve interconnected data by representing entities using Unified
Resource Identifiers (URIs), and sharing information using Resource Description …

The infectious disease ontology in the age of COVID-19

S Babcock, J Beverley, LG Cowell, B Smith - Journal of biomedical …, 2021 - Springer
Background Effective response to public health emergencies, such as we are now
experiencing with COVID-19, requires data sharing across multiple disciplines and data …