FPbase: a community-editable fluorescent protein database

TJ Lambert - Nature methods, 2019 - nature.com
To the Editor—The cloning and subsequent engineering of fluorescent proteins (FPs) has
revolutionized methods in biological research1, 2. There are now thousands of FPs …

A high-throughput multiparameter screen for accelerated development and optimization of soluble genetically encoded fluorescent biosensors

D Koveal, PC Rosen, DJ Meyer… - Nature …, 2022 - nature.com
Genetically encoded fluorescent biosensors are powerful tools used to track chemical
processes in intact biological systems. However, the development and optimization of …

Optimizing the fluorescent protein toolbox and its use

S Duwé, P Dedecker - Current opinion in biotechnology, 2019 - Elsevier
Highlights•Fluorescent proteins continue to be essential tools in life sciences.•
Phototransformable FPs and biosensors facilitate advanced imaging experiments.• …

Functional principles of genetically encoded fluorescent biosensors for metabolism and their quantitative use

D Koveal - Journal of Neurochemistry, 2024 - Wiley Online Library
Genetically encoded fluorescent biosensors provide an attractive means of measuring
chemical changes in single cells on fast timescales (milliseconds to seconds). While their …

Directed evolution of a bright variant of mCherry: suppression of nonradiative decay by fluorescence lifetime selections

S Mukherjee, P Manna, ST Hung… - The Journal of …, 2022 - ACS Publications
The approximately linear scaling of fluorescence quantum yield (ϕ) with fluorescence
lifetime (τ) in fluorescent proteins (FPs) has inspired engineering of brighter fluorophores …

Photophysical engineering of fluorescent proteins: Accomplishments and challenges of physical chemistry strategies

S Mukherjee, R Jimenez - The Journal of Physical Chemistry B, 2022 - ACS Publications
Fluorescent proteins (FPs) have become ubiquitous tools for biological research and
concomitantly they are intriguing molecules that are amenable to study with a wide range of …

Engineering of a brighter variant of the fusionred fluorescent protein using lifetime flow cytometry and structure-guided mutations

S Mukherjee, ST Hung, N Douglas, P Manna… - Biochemistry, 2020 - ACS Publications
The development of fluorescent proteins (FPs) has revolutionized biological imaging.
FusionRed, a monomeric red FP (RFP), is known for its low cytotoxicity and correct …

Influence of fluorescence lifetime selections and conformational flexibility on brightness of fusionRed variants

S Mukherjee, N Douglas, R Jimenez - The Journal of Physical …, 2024 - ACS Publications
Fluorescent proteins (FPs) for bioimaging are typically developed by screening mutant
libraries for clones with improved photophysical properties. This approach has resulted in …

Energetic basis and design of enzyme function demonstrated using gfp, an excited-state enzyme

CY Lin, MG Romei, II Mathews… - Journal of the American …, 2022 - ACS Publications
The past decades have witnessed an explosion of de novo protein designs with a
remarkable range of scaffolds. It remains challenging, however, to design catalytic functions …

Rapid directed molecular evolution of fluorescent proteins in mammalian cells

S Babakhanova, EE Jung, K Namikawa… - Protein …, 2022 - Wiley Online Library
In vivo imaging of model organisms is heavily reliant on fluorescent proteins with high
intracellular brightness. Here we describe a practical method for rapid optimization of …