Bayesian inference: the comprehensive approach to analyzing single-molecule experiments
CD Kinz-Thompson, KK Ray… - Annual Review of …, 2021 - annualreviews.org
Biophysics experiments performed at single-molecule resolution provide exceptional insight
into the structural details and dynamic behavior of biological systems. However, extracting …
into the structural details and dynamic behavior of biological systems. However, extracting …
Increasing the accuracy of single-molecule data analysis using tMAVEN
AR Verma, KK Ray, M Bodick, CD Kinz-Thompson… - Biophysical …, 2024 - cell.com
Time-dependent single-molecule experiments contain rich kinetic information about the
functional dynamics of biomolecules. A key step in extracting this information is the …
functional dynamics of biomolecules. A key step in extracting this information is the …
Efficient, nonparametric removal of noise and recovery of probability distributions from time series using nonlinear-correlation functions: Additive noise
M Dhar, JA Dickinson, MA Berg - The Journal of Chemical Physics, 2023 - pubs.aip.org
Single-molecule and related experiments yield time series of an observable as it fluctuates
due to thermal motion. In such data, it can be difficult to distinguish fluctuating signal from …
due to thermal motion. In such data, it can be difficult to distinguish fluctuating signal from …
Biophysical Models of PAR Cluster Transport by Cortical Flow in C. elegans Early Embryogenesis
C Zmurchok, WR Holmes - Bulletin of Mathematical Biology, 2022 - Springer
The clustering of membrane-bound proteins facilitates their transport by cortical actin flow in
early Caenorhabditis elegans embryo cell polarity. PAR-3 clustering is critical for this …
early Caenorhabditis elegans embryo cell polarity. PAR-3 clustering is critical for this …
A New Perspective on Understanding Resolution Limit Via an Asymptotic Study of Christoffel-Darboux Kernel Based Spectrum Estimator
M Jiang, W Lu, H Qiao - ICASSP 2024-2024 IEEE International …, 2024 - ieeexplore.ieee.org
This paper aims to provide a new perspective on understanding the resolution limit by
examining a recently proposed spectrum estimator based on the Christoffel-Darboux Kernel …
examining a recently proposed spectrum estimator based on the Christoffel-Darboux Kernel …
Efficient, nonparametric removal of noise and recovery of probability distributions from time series using nonlinear-correlation functions: Photon and photon-counting …
M Dhar, MA Berg - The Journal of Chemical Physics, 2024 - pubs.aip.org
A preceding paper [M. Dhar, JA Dickinson, and MA Berg, J. Chem. Phys. 159, 054110
(2023)] shows how to remove additive noise from an experimental time series, allowing both …
(2023)] shows how to remove additive noise from an experimental time series, allowing both …
What is resolution? A statistical minimax testing perspective on superresolution microscopy
What is resolution? A statistical minimax testing perspective on superresolution microscopy
Page 1 The Annals of Statistics 2021, Vol. 49, No. 4, 2292–2312 https://doi.org/10.1214/20-AOS2037 …
Page 1 The Annals of Statistics 2021, Vol. 49, No. 4, 2292–2312 https://doi.org/10.1214/20-AOS2037 …
Modelling the Circadian Clock
AA Koch - 2023 - search.proquest.com
Organisms have evolved molecular clocks to track 24-hour day/night light cycles which
regulate all important physiological functions including metabolism, immunity, and cell-cycle …
regulate all important physiological functions including metabolism, immunity, and cell-cycle …
Single-Particle Dynamics in Nanoscopic Systems: Statistical Modeling and Inference
F Zhu - 2022 - uwspace.uwaterloo.ca
Our work aims to solve some of the most significant and fundamental theoretical problems
involved in the current statistical modeling of stochastic processes in single-molecule …
involved in the current statistical modeling of stochastic processes in single-molecule …
Single-Focus Confocal Data Analysis with Bayesian Nonparametrics
S Jazani - 2020 - search.proquest.com
The cell is a dense environment composes of proteins, nucleic acids, as well as other small
molecules, which are constantly bombarding each other and interacting. These interactions …
molecules, which are constantly bombarding each other and interacting. These interactions …