Unique features of long non-coding RNA biogenesis and function
Long non-coding RNAs (lncRNAs) are a diverse class of RNAs that engage in numerous
biological processes across every branch of life. Although initially discovered as mRNA-like …
biological processes across every branch of life. Although initially discovered as mRNA-like …
Roadblocks and resolutions in eukaryotic translation
AP Schuller, R Green - Nature Reviews Molecular Cell Biology, 2018 - nature.com
During protein synthesis, ribosomes encounter many roadblocks, the outcomes of which are
largely determined by substrate availability, amino acid features and reaction kinetics …
largely determined by substrate availability, amino acid features and reaction kinetics …
Transcription termination and the control of the transcriptome: why, where and how to stop
O Porrua, D Libri - Nature reviews Molecular cell biology, 2015 - nature.com
Transcription termination occurs when the polymerase is released after a transcription event,
thus delimitating transcription units; however, the functional importance of termination …
thus delimitating transcription units; however, the functional importance of termination …
NMD: a multifaceted response to premature translational termination
S Kervestin, A Jacobson - Nature reviews Molecular cell biology, 2012 - nature.com
Although most mRNA molecules derived from protein-coding genes are destined to be
translated into functional polypeptides, some are eliminated by cellular quality control …
translated into functional polypeptides, some are eliminated by cellular quality control …
[HTML][HTML] Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
Most DNA in the genomes of higher organisms does not encode proteins, yet much is
transcribed by RNA polymerase II (RNAPII) into long non-coding RNAs (lncRNAs). The …
transcribed by RNA polymerase II (RNAPII) into long non-coding RNAs (lncRNAs). The …
[PDF][PDF] Dealing with pervasive transcription
TH Jensen, A Jacquier, D Libri - Molecular cell, 2013 - cell.com
Eukaryotic genomes are pervasively transcribed. However, it is unclear how many newly
found RNAs have functions and how many are byproducts of functional, or spurious …
found RNAs have functions and how many are byproducts of functional, or spurious …
[HTML][HTML] Transcriptome surveillance by selective termination of noncoding RNA synthesis
Pervasive transcription of eukaryotic genomes stems to a large extent from bidirectional
promoters that synthesize mRNA and divergent noncoding RNA (ncRNA). Here, we show …
promoters that synthesize mRNA and divergent noncoding RNA (ncRNA). Here, we show …
The transcription cycle in eukaryotes: from productive initiation to RNA polymerase II recycling
J Shandilya, SGE Roberts - Biochimica et Biophysica Acta (BBA)-Gene …, 2012 - Elsevier
The cycle of eukaryotic transcription, from initiation to elongation and termination is
regulated at multiple steps. Coordinated action of regulatory factors keeps in check the …
regulated at multiple steps. Coordinated action of regulatory factors keeps in check the …
[HTML][HTML] Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics
TS Kim, Z Xu, S Clauder-Münster, LM Steinmetz… - Cell, 2012 - cell.com
The Set3 histone deacetylase complex (Set3C) binds histone H3 dimethylated at lysine 4
(H3K4me2) to mediate deacetylation of histones in 5′-transcribed regions. To discern how …
(H3K4me2) to mediate deacetylation of histones in 5′-transcribed regions. To discern how …
[HTML][HTML] Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast
HE Mischo, NJ Proudfoot - Biochimica et Biophysica Acta (BBA)-Gene …, 2013 - Elsevier
Termination of transcription by RNA polymerase II requires two distinct processes: The
formation of a defined 3′ end of the transcribed RNA, as well as the disengagement of RNA …
formation of a defined 3′ end of the transcribed RNA, as well as the disengagement of RNA …