Unique features of long non-coding RNA biogenesis and function

JJ Quinn, HY Chang - Nature reviews genetics, 2016 - nature.com
Long non-coding RNAs (lncRNAs) are a diverse class of RNAs that engage in numerous
biological processes across every branch of life. Although initially discovered as mRNA-like …

Roadblocks and resolutions in eukaryotic translation

AP Schuller, R Green - Nature Reviews Molecular Cell Biology, 2018 - nature.com
During protein synthesis, ribosomes encounter many roadblocks, the outcomes of which are
largely determined by substrate availability, amino acid features and reaction kinetics …

Transcription termination and the control of the transcriptome: why, where and how to stop

O Porrua, D Libri - Nature reviews Molecular cell biology, 2015 - nature.com
Transcription termination occurs when the polymerase is released after a transcription event,
thus delimitating transcription units; however, the functional importance of termination …

NMD: a multifaceted response to premature translational termination

S Kervestin, A Jacobson - Nature reviews Molecular cell biology, 2012 - nature.com
Although most mRNA molecules derived from protein-coding genes are destined to be
translated into functional polypeptides, some are eliminated by cellular quality control …

[HTML][HTML] Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

P Kindgren, R Ard, M Ivanov, S Marquardt - Nature communications, 2018 - nature.com
Most DNA in the genomes of higher organisms does not encode proteins, yet much is
transcribed by RNA polymerase II (RNAPII) into long non-coding RNAs (lncRNAs). The …

[PDF][PDF] Dealing with pervasive transcription

TH Jensen, A Jacquier, D Libri - Molecular cell, 2013 - cell.com
Eukaryotic genomes are pervasively transcribed. However, it is unclear how many newly
found RNAs have functions and how many are byproducts of functional, or spurious …

[HTML][HTML] Transcriptome surveillance by selective termination of noncoding RNA synthesis

D Schulz, B Schwalb, A Kiesel, C Baejen, P Torkler… - Cell, 2013 - cell.com
Pervasive transcription of eukaryotic genomes stems to a large extent from bidirectional
promoters that synthesize mRNA and divergent noncoding RNA (ncRNA). Here, we show …

The transcription cycle in eukaryotes: from productive initiation to RNA polymerase II recycling

J Shandilya, SGE Roberts - Biochimica et Biophysica Acta (BBA)-Gene …, 2012 - Elsevier
The cycle of eukaryotic transcription, from initiation to elongation and termination is
regulated at multiple steps. Coordinated action of regulatory factors keeps in check the …

[HTML][HTML] Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics

TS Kim, Z Xu, S Clauder-Münster, LM Steinmetz… - Cell, 2012 - cell.com
The Set3 histone deacetylase complex (Set3C) binds histone H3 dimethylated at lysine 4
(H3K4me2) to mediate deacetylation of histones in 5′-transcribed regions. To discern how …

[HTML][HTML] Disengaging polymerase: terminating RNA polymerase II transcription in budding yeast

HE Mischo, NJ Proudfoot - Biochimica et Biophysica Acta (BBA)-Gene …, 2013 - Elsevier
Termination of transcription by RNA polymerase II requires two distinct processes: The
formation of a defined 3′ end of the transcribed RNA, as well as the disengagement of RNA …