Diversity within species: interpreting strains in microbiomes

T Van Rossum, P Ferretti, OM Maistrenko… - Nature Reviews …, 2020 - nature.com
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …

Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics

M Lopez-Siles, SH Duncan, LJ Garcia-Gil… - The ISME …, 2017 - academic.oup.com
There is an increasing interest in Faecalibacterium prausnitzii, one of the most abundant
bacterial species found in the gut, given its potentially important role in promoting gut health …

High proportions of bacteria and archaea across most biomes remain uncultured

AD Steen, A Crits-Christoph, P Carini… - The ISME …, 2019 - academic.oup.com
A recent paper by Martiny argues that “high proportions” of bacteria in diverse Earth
environments have been cultured. Here we reanalyze a portion of the data in that paper, and …

[PDF][PDF] 土壤酶学的研究进展

张咏梅, 周国逸, 吴宁 - 热带亚热带植物学报, 2004 - cern.ac.cn
土壤酶在生态系统中是否作为一个组成成分, 经典生态学没有明确的表述,
但土壤酶在生态系统中具有重要的地位, 它参与了包括土壤生物化学过程在内的自然界物质循环 …

Plant growth promoting rhizobacteria as biofertilizers

JK Vessey - Plant and soil, 2003 - Springer
Numerous species of soil bacteria which flourish in the rhizosphere of plants, but which may
grow in, on, or around plant tissues, stimulate plant growth by a plethora of mechanisms …

Microbial populations responsible for specific soil suppressiveness to plant pathogens

DM Weller, JM Raaijmakers… - Annual review of …, 2002 - annualreviews.org
▪ Abstract Agricultural soils suppressive to soilborne plant pathogens occur worldwide, and
for several of these soils the biological basis of suppressiveness has been described. Two …

Beneficial effect of the rhizosphere microbial community for plant growth and health.

V Nihorimbere, M Ongena, M Smargiassi… - … , Agronomie, Société et …, 2011 - orbi.uliege.be
Plant rhizosphere is the soil nearest to the plant root system where roots release large
quantity of metabolites from living root hairs or fibrous root systems. These metabolites act …

Plant-driven selection of microbes

A Hartmann, M Schmid, D Tuinen, G Berg - 2009 - Springer
The rhizodeposition of plants dramatically influence the surrounding soil and its microflora.
Root exudates have pronounced selective and promoting effects on specific microbial …

Ecotoxicological assessment of antibiotics: a call for improved consideration of microorganisms

KK Brandt, A Amézquita, T Backhaus, A Boxall… - Environment …, 2015 - Elsevier
Antibiotics play a pivotal role in the management of infectious disease in humans,
companion animals, livestock, and aquaculture operations at a global scale. Antibiotics are …

Re-evaluating prokaryotic species

D Gevers, FM Cohan, JG Lawrence, BG Spratt… - Nature Reviews …, 2005 - nature.com
There is no widely accepted concept of species for prokaryotes, and assignment of isolates
to species is based on measures of phenotypic or genome similarity. The current methods …