Diversity within species: interpreting strains in microbiomes
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …
Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics
M Lopez-Siles, SH Duncan, LJ Garcia-Gil… - The ISME …, 2017 - academic.oup.com
There is an increasing interest in Faecalibacterium prausnitzii, one of the most abundant
bacterial species found in the gut, given its potentially important role in promoting gut health …
bacterial species found in the gut, given its potentially important role in promoting gut health …
High proportions of bacteria and archaea across most biomes remain uncultured
A recent paper by Martiny argues that “high proportions” of bacteria in diverse Earth
environments have been cultured. Here we reanalyze a portion of the data in that paper, and …
environments have been cultured. Here we reanalyze a portion of the data in that paper, and …
Plant growth promoting rhizobacteria as biofertilizers
JK Vessey - Plant and soil, 2003 - Springer
Numerous species of soil bacteria which flourish in the rhizosphere of plants, but which may
grow in, on, or around plant tissues, stimulate plant growth by a plethora of mechanisms …
grow in, on, or around plant tissues, stimulate plant growth by a plethora of mechanisms …
Microbial populations responsible for specific soil suppressiveness to plant pathogens
DM Weller, JM Raaijmakers… - Annual review of …, 2002 - annualreviews.org
▪ Abstract Agricultural soils suppressive to soilborne plant pathogens occur worldwide, and
for several of these soils the biological basis of suppressiveness has been described. Two …
for several of these soils the biological basis of suppressiveness has been described. Two …
Beneficial effect of the rhizosphere microbial community for plant growth and health.
V Nihorimbere, M Ongena, M Smargiassi… - … , Agronomie, Société et …, 2011 - orbi.uliege.be
Plant rhizosphere is the soil nearest to the plant root system where roots release large
quantity of metabolites from living root hairs or fibrous root systems. These metabolites act …
quantity of metabolites from living root hairs or fibrous root systems. These metabolites act …
Plant-driven selection of microbes
A Hartmann, M Schmid, D Tuinen, G Berg - 2009 - Springer
The rhizodeposition of plants dramatically influence the surrounding soil and its microflora.
Root exudates have pronounced selective and promoting effects on specific microbial …
Root exudates have pronounced selective and promoting effects on specific microbial …
Ecotoxicological assessment of antibiotics: a call for improved consideration of microorganisms
Antibiotics play a pivotal role in the management of infectious disease in humans,
companion animals, livestock, and aquaculture operations at a global scale. Antibiotics are …
companion animals, livestock, and aquaculture operations at a global scale. Antibiotics are …
Re-evaluating prokaryotic species
There is no widely accepted concept of species for prokaryotes, and assignment of isolates
to species is based on measures of phenotypic or genome similarity. The current methods …
to species is based on measures of phenotypic or genome similarity. The current methods …