[HTML][HTML] Recent advances in T-cell receptor repertoire analysis: bridging the gap with multimodal single-cell RNA sequencing

S Valkiers, N de Vrij, S Gielis, S Verbandt, B Ogunjimi… - ImmunoInformatics, 2022 - Elsevier
T cells exercise a multitude of functions such as cytotoxicity, secretion of immunomodulating
cytokines or regulation of tolerance, collectively resulting in an effective control of immune …

[HTML][HTML] T-Cell Receptor Repertoire Analysis with Computational Tools—An Immunologist's Perspective

M Arunkumar, CE Zielinski - Cells, 2021 - mdpi.com
Over the last few years, there has been a rapid expansion in the application of information
technology to biological data. Particularly the field of immunology has seen great strides in …

[HTML][HTML] A systematic analysis of the human immune response to Plasmodium vivax

FA Bach, DM Sandoval, M Mazurczyk… - The Journal of …, 2023 - Am Soc Clin Investig
BACKGROUND The biology of Plasmodium vivax is markedly different from that of P.
falciparum; how this shapes the immune response to infection remains unclear. To address …

[HTML][HTML] Plasmodium infection induces phenotypic, clonal, and spatial diversity among differentiating CD4+ T cells

CG Williams, ML Moreira, T Asatsuma, HJ Lee, S Li… - Cell Reports, 2024 - cell.com
Naive CD4+ T cells must differentiate in order to orchestrate immunity to Plasmodium, yet
understanding of their emerging phenotypes, clonality, spatial distributions, and cellular …

[HTML][HTML] Understanding the pathogenesis of infectious diseases by single-cell RNA sequencing

W Huang, D Wang, YF Yao - Microbial Cell, 2021 - ncbi.nlm.nih.gov
Infections are highly orchestrated and dynamic processes, which involve both pathogen and
host. Transcriptional profiling at the single-cell level enables the analysis of cell diversity …

Exploiting big data survival information to unify risk-stratification related, adaptive immune receptor parameters for multiple myeloma

HJ Wolmarans, VR Barker, A Chobrutskiy… - Genes & …, 2023 - nature.com
With the improvement of treatment options, multiple myeloma related life expectancy has
been prolonged, but the disease remains largely incurable. Immunotherapy is a growing …

Adaptive T cells regulate disease tolerance in human malaria

DM Sandoval, F Bach, W Nahrendorf, A Ivens… - MedRxiv, 2021 - medrxiv.org
Immunity to severe malaria is acquired quickly, operates independently of pathogen load
and represents a highly effective form of disease tolerance. The mechanism that underpins …

[HTML][HTML] Perturbations in the T cell receptor β repertoire during malaria infection in children: A preliminary study

A Frimpong, MF Ofori, AM Degoot, KA Kusi… - Frontiers in …, 2022 - frontiersin.org
The changes occurring in the T cell repertoire during clinical malaria infection in children
remain unknown. In this study, we undertook the first detailed comparative study of the T cell …

TRB CDR3-cancer testis antigen chemical complementarity scoring for identifying productive immune responses in renal cell carcinoma

TR Hudock, VR Barker, BJ Manley… - Cancer …, 2023 - content.iospress.com
BACKGROUND: Immunogenomics approaches to the characterization of renal cell
carcinoma (RCC) have helped to better our understanding of the features of RCC immune …

[PDF][PDF] Parasite species regulates T cell activation in human malaria

F Bach, DM Sandoval, M Mazurczyk, Y Themistocleous… - 2021 - academia.edu
Plasmodium vivax offers unique challenges for malaria control and may prove a more
difficult species to eradicate than Plasmodium falciparum. Yet compared to P. falciparum we …