In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR
G Pawar, JC Madden, D Ebbrell, JW Firman… - Frontiers in …, 2019 - frontiersin.org
A plethora of databases exist online that can assist in in silico chemical or drug safety
assessment. However, a systematic review and grouping of databases, based on purpose …
assessment. However, a systematic review and grouping of databases, based on purpose …
Enzyme Databases in the Era of Omics and Artificial Intelligence
U Prešern, M Goličnik - International Journal of Molecular Sciences, 2023 - mdpi.com
Enzyme research is important for the development of various scientific fields such as
medicine and biotechnology. Enzyme databases facilitate this research by providing a wide …
medicine and biotechnology. Enzyme databases facilitate this research by providing a wide …
ProtVista: visualization of protein sequence annotations
ProtVista is a comprehensive visualization tool for the graphical representation of protein
sequence features in the UniProt Knowledgebase, experimental proteomics and variation …
sequence features in the UniProt Knowledgebase, experimental proteomics and variation …
Updates in Rhea—an expert curated resource of biochemical reactions
A Morgat, T Lombardot, KB Axelsen, L Aimo… - Nucleic acids …, 2016 - academic.oup.com
Abstract Rhea (http://www. rhea-db. org) is a comprehensive and non-redundant resource of
expert-curated biochemical reactions designed for the functional annotation of enzymes and …
expert-curated biochemical reactions designed for the functional annotation of enzymes and …
FAIR Data and Software: Improving Efficiency and Quality of Biocatalytic Science
J Pleiss - ACS Catalysis, 2024 - ACS Publications
Biocatalysis is entering a promising era as a data-driven science. High-throughput
experimentation generates a rapidly increasing stream of biocatalytic data, which is the raw …
experimentation generates a rapidly increasing stream of biocatalytic data, which is the raw …
The european bioinformatics institute's data resources 2014
C Brooksbank, MT Bergman, R Apweiler… - Nucleic acids …, 2014 - academic.oup.com
Molecular Biology has been at the heart of the 'big data'revolution from its very beginning,
and the need for access to biological data is a common thread running from the 1965 …
and the need for access to biological data is a common thread running from the 1965 …
Updates in Rhea—a manually curated resource of biochemical reactions
A Morgat, KB Axelsen, T Lombardot… - Nucleic acids …, 2015 - academic.oup.com
Abstract Rhea (http://www. ebi. ac. uk/rhea) is a comprehensive and non-redundant
resource of expert-curated biochemical reactions described using species from the ChEBI …
resource of expert-curated biochemical reactions described using species from the ChEBI …
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI
S Squizzato, YM Park, N Buso, T Gur… - Nucleic acids …, 2015 - academic.oup.com
Abstract The European Bioinformatics Institute (EMBL-EBI—https://www. ebi. ac. uk)
provides free and unrestricted access to data across all major areas of biology and …
provides free and unrestricted access to data across all major areas of biology and …
The EBI search engine: EBI search as a service—making biological data accessible for all
YM Park, S Squizzato, N Buso, T Gur… - Nucleic acids …, 2017 - academic.oup.com
We present an update of the EBI Search engine, an easy-to-use fast text search and
indexing system with powerful data navigation and retrieval capabilities. The …
indexing system with powerful data navigation and retrieval capabilities. The …
Standardized data, scalable documentation, sustainable storage–EnzymeML as a basis for FAIR data management in biocatalysis
J Pleiss - ChemCatChem, 2021 - Wiley Online Library
The often reported reproducibility crisis in the biomedical sciences also applies to
enzymology and biocatalysis, and mainly results from incomplete reporting of reaction …
enzymology and biocatalysis, and mainly results from incomplete reporting of reaction …