The bacterial epigenome

MA Sánchez-Romero, J Casadesús - Nature Reviews Microbiology, 2020 - nature.com
In all domains of life, genomes contain epigenetic information superimposed over the
nucleotide sequence. Epigenetic signals control DNA–protein interactions and can cause …

Deciphering bacterial epigenomes using modern sequencing technologies

J Beaulaurier, EE Schadt, G Fang - Nature Reviews Genetics, 2019 - nature.com
Prokaryotic DNA contains three types of methylation: N6-methyladenine, N4-methylcytosine
and 5-methylcytosine. The lack of tools to analyse the frequency and distribution of …

[HTML][HTML] Bacteriophage lambda: Early pioneer and still relevant

SR Casjens, RW Hendrix - Virology, 2015 - Elsevier
Molecular genetic research on bacteriophage lambda carried out during its golden age from
the mid-1950s to mid-1980s was critically important in the attainment of our current …

DNA methylation in bacteria: from the methyl group to the methylome

MA Sánchez-Romero, I Cota, J Casadesús - Current opinion in …, 2015 - Elsevier
Highlights•Bacterial genomes contain C 5-methyl-cytosine, N 4-methyl-cytosine, and N 6-
methyl-adenine.•Base methylation controls DNA–protein interactions.•DNA methylation …

Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria

SM Chiang, HE Schellhorn - Archives of biochemistry and biophysics, 2012 - Elsevier
Oxidative stress, through the production of reactive oxygen species, is a natural
consequence of aerobic metabolism. Escherichia coli has several major regulators activated …

Programmed heterogeneity: epigenetic mechanisms in bacteria

J Casadesús, DA Low - Journal of Biological Chemistry, 2013 - ASBMB
Contrary to the traditional view that bacterial populations are clonal, single-cell analysis
reveals that phenotypic heterogeneity is common in bacteria. Formation of distinct bacterial …

Peroxide‐sensing transcriptional regulators in bacteria

JM Dubbs, S Mongkolsuk - Stress and environmental …, 2016 - Wiley Online Library
Exposure to reactive oxygen species (ROS) is a fact of life for aerobic organisms as well as
anaerobes that experience transient exposure to oxygen. Aerobic bacteria produce them as …

DNA Methylation Impacts Gene Expression and Ensures Hypoxic Survival of Mycobacterium tuberculosis

SS Shell, EG Prestwich, SH Baek, RR Shah… - PLoS …, 2013 - journals.plos.org
DNA methylation regulates gene expression in many organisms. In eukaryotes, DNA
methylation is associated with gene repression, while it exerts both activating and repressive …

Phase variation: how to create and coordinate population diversity

MW Van der Woude - Current opinion in microbiology, 2011 - Elsevier
Phase variation yields phenotypic heterogeneity in a clonal population as the result of one of
a limited number of known molecular mechanisms. These include slipped strand mispairing …

Culture history and population heterogeneity as determinants of bacterial adaptation: the adaptomics of a single environmental transition

B Ryall, G Eydallin, T Ferenci - Microbiology and Molecular …, 2012 - Am Soc Microbiol
Diversity in adaptive responses is common within species and populations, especially when
the heterogeneity of the frequently large populations found in environments is considered …