[HTML][HTML] An overview of recent technological developments in bovine genomics
NG Hossein-Zadeh - Veterinary and Animal Science, 2024 - Elsevier
Cattle are regarded as highly valuable animals because of their milk, beef, dung, fur, and
ability to draft. The scientific community has tried a number of strategies to improve the …
ability to draft. The scientific community has tried a number of strategies to improve the …
A cattle graph genome incorporating global breed diversity
Despite only 8% of cattle being found in Europe, European breeds dominate current genetic
resources. This adversely impacts cattle research in other important global cattle breeds …
resources. This adversely impacts cattle research in other important global cattle breeds …
Novel functional sequences uncovered through a bovine multiassembly graph
Many genomic analyses start by aligning sequencing reads to a linear reference genome.
However, linear reference genomes are imperfect, lacking millions of bases of unknown …
However, linear reference genomes are imperfect, lacking millions of bases of unknown …
Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies
Advantages of pangenomes over linear reference assemblies for genome research have
recently been established. However, potential effects of sequence platform and assembly …
recently been established. However, potential effects of sequence platform and assembly …
The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species
Abstract The Bovine Pangenome Consortium (BPC) is an international collaboration
dedicated to the assembly of cattle genomes to develop a more complete representation of …
dedicated to the assembly of cattle genomes to develop a more complete representation of …
[HTML][HTML] Symposium review: Advances in sequencing technology herald a new frontier in cattle genomics and genome-enabled selection
The cattle reference genome assembly has underpinned major innovations in beef and
dairy genetics through genome-enabled selection, including removal of deleterious …
dairy genetics through genome-enabled selection, including removal of deleterious …
Assessing genomic diversity and signatures of selection in Original Braunvieh cattle using whole-genome sequencing data
Background Autochthonous cattle breeds are an important source of genetic variation
because they might carry alleles that enable them to adapt to local environment and food …
because they might carry alleles that enable them to adapt to local environment and food …
Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discovery
D Crysnanto, H Pausch - Genome biology, 2020 - Springer
Background The current bovine genomic reference sequence was assembled from a
Hereford cow. The resulting linear assembly lacks diversity because it does not contain …
Hereford cow. The resulting linear assembly lacks diversity because it does not contain …
Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
Pangenomics is emerging as a powerful computational paradigm in bioinformatics. This field
uses population-level genome reference structures, typically consisting of a sequence …
uses population-level genome reference structures, typically consisting of a sequence …
Activation of cryptic splicing in bovine WDR19 is associated with reduced semen quality and male fertility
Cattle are ideally suited to investigate the genetics of male reproduction, because semen
quality and fertility are recorded for all ejaculates of artificial insemination bulls. We analysed …
quality and fertility are recorded for all ejaculates of artificial insemination bulls. We analysed …