Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins
Despite their diverse biochemical characteristics and functions, all DNA-binding proteins
share the ability to accurately locate their target sites among the vast excess of non-target …
share the ability to accurately locate their target sites among the vast excess of non-target …
Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes
Visualizing and quantifying molecular motion and interactions inside living cells provides
crucial insight into the mechanisms underlying cell function. This has been achieved by …
crucial insight into the mechanisms underlying cell function. This has been achieved by …
Recurrent mismatch binding by MutS mobile clamps on DNA localizes repair complexes nearby
P Hao, SJ LeBlanc, BC Case… - Proceedings of the …, 2020 - National Acad Sciences
DNA mismatch repair (MMR), the guardian of the genome, commences when MutS identifies
a mismatch and recruits MutL to nick the error-containing strand, allowing excision and DNA …
a mismatch and recruits MutL to nick the error-containing strand, allowing excision and DNA …
Novel organophosphorus aminopyrimidines as unique structural DNA-targeting membrane active inhibitors towards drug-resistant methicillin-resistant …
D Li, RRY Bheemanaboina, N Battini… - …, 2018 - pubs.rsc.org
A series of novel unique structural organophosphorus aminopyrimidines were developed as
potential DNA-targeting membrane active inhibitors through an efficient one-pot procedure …
potential DNA-targeting membrane active inhibitors through an efficient one-pot procedure …
[HTML][HTML] Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes
HL Klein, KKH Ang, MR Arkin, EC Beckwitt… - Microbial Cell, 2019 - ncbi.nlm.nih.gov
Genomes are constantly in flux, undergoing changes due to recombination, repair and
mutagenesis. In vivo, many of such changes are studies using reporters for specific types of …
mutagenesis. In vivo, many of such changes are studies using reporters for specific types of …
Single-molecule studies of helicases and translocases in prokaryotic genome-maintenance pathways
Helicases involved in genomic maintenance are a class of nucleic-acid dependent ATPases
that convert the energy of ATP hydrolysis into physical work to execute irreversible steps in …
that convert the energy of ATP hydrolysis into physical work to execute irreversible steps in …
Dimerization of iLID optogenetic proteins observed using 3D single-molecule tracking in live E. coli
AM Achimovich, T Yan, A Gahlmann - Biophysical Journal, 2023 - cell.com
Abstract 3D single-molecule tracking microscopy has enabled measurements of protein
diffusion in living cells, offering information about protein dynamics and cellular …
diffusion in living cells, offering information about protein dynamics and cellular …
Super-resolution microscopy and tracking of DNA-binding proteins in bacterial cells
CJ Cassaro, S Uphoff - Chromosome Architecture: Methods and Protocols, 2022 - Springer
The ability to detect individual fluorescent molecules inside living cells has enabled a range
of powerful microscopy techniques that resolve biological processes on the molecular scale …
of powerful microscopy techniques that resolve biological processes on the molecular scale …
Identification of multiple kinetic populations of DNA-binding proteins in live cells
Understanding how multiprotein complexes function in cells requires detailed quantitative
understanding of their association and dissociation kinetics. Analysis of the heterogeneity of …
understanding of their association and dissociation kinetics. Analysis of the heterogeneity of …
Single-Molecule Fluorescence Imaging of DNA Replication Stalling at Sites of Nucleoprotein Complexes
KS Whinn, N Sharma, AM van Oijen… - Single Molecule Analysis …, 2023 - Springer
DNA replication in cells occurs on crowded and often damaged template DNA, forming
potentially deleterious roadblocks to the progressing replication fork. Numerous tools have …
potentially deleterious roadblocks to the progressing replication fork. Numerous tools have …