Latest developed strategies to minimize the off-target effects in CRISPR-Cas-mediated genome editing

M Naeem, S Majeed, MZ Hoque, I Ahmad - Cells, 2020 - mdpi.com
Gene editing that makes target gene modification in the genome by deletion or addition has
revolutionized the era of biomedicine. Clustered regularly interspaced short palindromic …

Machine learning meets omics: applications and perspectives

R Li, L Li, Y Xu, J Yang - Briefings in Bioinformatics, 2022 - academic.oup.com
The innovation of biotechnologies has allowed the accumulation of omics data at an
alarming rate, thus introducing the era of 'big data'. Extracting inherent valuable knowledge …

Human genetic diversity alters off-target outcomes of therapeutic gene editing

S Cancellieri, J Zeng, LY Lin, M Tognon, MA Nguyen… - Nature …, 2023 - nature.com
CRISPR gene editing holds great promise to modify DNA sequences in somatic cells to treat
disease. However, standard computational and biochemical methods to predict off-target …

DeepCRISPR: optimized CRISPR guide RNA design by deep learning

G Chuai, H Ma, J Yan, M Chen, N Hong, D Xue, C Zhou… - Genome biology, 2018 - Springer
A major challenge for effective application of CRISPR systems is to accurately predict the
single guide RNA (sgRNA) on-target knockout efficacy and off-target profile, which would …

Unbiased detection of CRISPR off-targets in vivo using DISCOVER-Seq

B Wienert, SK Wyman, CD Richardson, CD Yeh… - Science, 2019 - science.org
CRISPR-Cas genome editing induces targeted DNA damage but can also affect off-target
sites. Current off-target discovery methods work using purified DNA or specific cellular …

Computational tools and resources for CRISPR/Cas genome editing

C Li, W Chu, RA Gill, S Sang, Y Shi, X Hu… - Genomics …, 2023 - academic.oup.com
The past decade has witnessed a rapid evolution in identifying more versatile clustered
regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) …

Translating cancer genomics into precision medicine with artificial intelligence: applications, challenges and future perspectives

J Xu, P Yang, S Xue, B Sharma, M Sanchez-Martin… - Human genetics, 2019 - Springer
In the field of cancer genomics, the broad availability of genetic information offered by next-
generation sequencing technologies and rapid growth in biomedical publication has led to …

Review of CRISPR/Cas9 sgRNA design tools

Y Cui, J Xu, M Cheng, X Liao, S Peng - … Sciences: Computational Life …, 2018 - Springer
The adaptive immunity system in bacteria and archaea, Clustered Regularly Interspaced
Short Palindromic Repeats, CRISPR-associate (CRISPR/Cas), has been adapted as a …

[HTML][HTML] Computational approaches for effective CRISPR guide RNA design and evaluation

G Liu, Y Zhang, T Zhang - Computational and structural biotechnology …, 2020 - Elsevier
Abstract The Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)/CRISPR-
associated (Cas) system has emerged as the main technology for gene editing. Successful …

Recent advances in machine learning applications in metabolic engineering

P Patra, BR Disha, P Kundu, M Das, A Ghosh - Biotechnology Advances, 2023 - Elsevier
Metabolic engineering encompasses several widely-used strategies, which currently hold a
high seat in the field of biotechnology when its potential is manifesting through a plethora of …