Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology
FJ O'Reilly, J Rappsilber - Nature structural & molecular biology, 2018 - nature.com
Over the past decade, cross-linking mass spectrometry (CLMS) has developed into a robust
and flexible tool that provides medium-resolution structural information. CLMS data provide …
and flexible tool that provides medium-resolution structural information. CLMS data provide …
[HTML][HTML] Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems
Highlights•Hybrid-FRET on rails automates FRET-based integrative structural
modeling.•Automated experiment design assures highest structural quality with minimal …
modeling.•Automated experiment design assures highest structural quality with minimal …
Critical assessment of methods of protein structure prediction (CASP)—Round XII
This article reports the outcome of the 12th round of Critical Assessment of Structure
Prediction (CASP12), held in 2016. CASP is a community experiment to determine the state …
Prediction (CASP12), held in 2016. CASP is a community experiment to determine the state …
[HTML][HTML] Anatomy of a crosslinker
A Belsom, J Rappsilber - Current opinion in chemical biology, 2021 - Elsevier
Crosslinking mass spectrometry has become a core technology in structural biology and is
expanding its reach towards systems biology. Its appeal lies in a rapid workflow, high …
expanding its reach towards systems biology. Its appeal lies in a rapid workflow, high …
[HTML][HTML] Protein tertiary structure by crosslinking/mass spectrometry
Observing the structures of proteins within the cell and tracking structural changes under
different cellular conditions are the ultimate challenges for structural biology. This, however …
different cellular conditions are the ultimate challenges for structural biology. This, however …
Protein structure prediction with mass spectrometry data
Knowledge of protein structure is crucial to our understanding of biological function and is
routinely used in drug discovery. High-resolution techniques to determine the three …
routinely used in drug discovery. High-resolution techniques to determine the three …
Surface accessibility and dynamics of macromolecular assemblies probed by covalent labeling mass spectrometry and integrative modeling
Mass spectrometry (MS) has become an indispensable tool for investigating the
architectures and dynamics of macromolecular assemblies. Here we show that covalent …
architectures and dynamics of macromolecular assemblies. Here we show that covalent …
[HTML][HTML] Integrative modeling of a Sin3/HDAC complex sub-structure
CAS Banks, Y Zhang, S Miah, Y Hao, MK Adams… - Cell reports, 2020 - cell.com
Sin3/HDAC complexes function by deacetylating histones, condensing chromatin, and
modulating gene expression. Although components used to build these complexes have …
modulating gene expression. Although components used to build these complexes have …
Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13
With the advance of experimental procedures obtaining chemical crosslinking information is
becoming a fast and routine practice. Information on crosslinks can greatly enhance the …
becoming a fast and routine practice. Information on crosslinks can greatly enhance the …
The first MS-cleavable, photo-thiol-reactive cross-linker for protein structural studies
C Iacobucci, C Piotrowski, A Rehkamp… - Journal of the …, 2018 - ACS Publications
Cleavable cross-linkers are gaining increasing importance for chemical cross-linking/mass
spectrometry (MS) as they permit a reliable and automated data analysis in structural studies …
spectrometry (MS) as they permit a reliable and automated data analysis in structural studies …