Cross-linking mass spectrometry: methods and applications in structural, molecular and systems biology

FJ O'Reilly, J Rappsilber - Nature structural & molecular biology, 2018 - nature.com
Over the past decade, cross-linking mass spectrometry (CLMS) has developed into a robust
and flexible tool that provides medium-resolution structural information. CLMS data provide …

[HTML][HTML] Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems

M Dimura, TO Peulen, CA Hanke, A Prakash… - Current opinion in …, 2016 - Elsevier
Highlights•Hybrid-FRET on rails automates FRET-based integrative structural
modeling.•Automated experiment design assures highest structural quality with minimal …

Critical assessment of methods of protein structure prediction (CASP)—Round XII

J Moult, K Fidelis, A Kryshtafovych… - Proteins: Structure …, 2018 - Wiley Online Library
This article reports the outcome of the 12th round of Critical Assessment of Structure
Prediction (CASP12), held in 2016. CASP is a community experiment to determine the state …

[HTML][HTML] Anatomy of a crosslinker

A Belsom, J Rappsilber - Current opinion in chemical biology, 2021 - Elsevier
Crosslinking mass spectrometry has become a core technology in structural biology and is
expanding its reach towards systems biology. Its appeal lies in a rapid workflow, high …

[HTML][HTML] Protein tertiary structure by crosslinking/mass spectrometry

M Schneider, A Belsom, J Rappsilber - Trends in biochemical sciences, 2018 - cell.com
Observing the structures of proteins within the cell and tracking structural changes under
different cellular conditions are the ultimate challenges for structural biology. This, however …

Protein structure prediction with mass spectrometry data

SE Biehn, S Lindert - Annual review of physical chemistry, 2022 - annualreviews.org
Knowledge of protein structure is crucial to our understanding of biological function and is
routinely used in drug discovery. High-resolution techniques to determine the three …

Surface accessibility and dynamics of macromolecular assemblies probed by covalent labeling mass spectrometry and integrative modeling

C Schmidt, JA Macpherson, AM Lau, KW Tan… - Analytical …, 2017 - ACS Publications
Mass spectrometry (MS) has become an indispensable tool for investigating the
architectures and dynamics of macromolecular assemblies. Here we show that covalent …

[HTML][HTML] Integrative modeling of a Sin3/HDAC complex sub-structure

CAS Banks, Y Zhang, S Miah, Y Hao, MK Adams… - Cell reports, 2020 - cell.com
Sin3/HDAC complexes function by deacetylating histones, condensing chromatin, and
modulating gene expression. Although components used to build these complexes have …

Assessment of chemical‐crosslink‐assisted protein structure modeling in CASP13

JE Fajardo, R Shrestha, N Gil, A Belsom… - Proteins: Structure …, 2019 - Wiley Online Library
With the advance of experimental procedures obtaining chemical crosslinking information is
becoming a fast and routine practice. Information on crosslinks can greatly enhance the …

The first MS-cleavable, photo-thiol-reactive cross-linker for protein structural studies

C Iacobucci, C Piotrowski, A Rehkamp… - Journal of the …, 2018 - ACS Publications
Cleavable cross-linkers are gaining increasing importance for chemical cross-linking/mass
spectrometry (MS) as they permit a reliable and automated data analysis in structural studies …