Graph neural networks for automated de novo drug design
Highlights•GNN has attracted wide attention from the field of designing drug molecules.•The
applications of GNN in molecule scoring, molecule generation and optimization, and …
applications of GNN in molecule scoring, molecule generation and optimization, and …
[HTML][HTML] Artificial intelligence for retrosynthesis prediction
In recent years, there has been a dramatic rise in interest in retrosynthesis prediction with
artificial intelligence (AI) techniques. Unlike conventional retrosynthesis prediction …
artificial intelligence (AI) techniques. Unlike conventional retrosynthesis prediction …
RetroBioCat as a computer-aided synthesis planning tool for biocatalytic reactions and cascades
As the enzyme toolbox for biocatalysis has expanded, so has the potential for the
construction of powerful enzymatic cascades for efficient and selective synthesis of target …
construction of powerful enzymatic cascades for efficient and selective synthesis of target …
Current and future roles of artificial intelligence in medicinal chemistry synthesis
Artificial intelligence and machine learning have demonstrated their potential role in
predictive chemistry and synthetic planning of small molecules; there are at least a few …
predictive chemistry and synthetic planning of small molecules; there are at least a few …
Retro*: learning retrosynthetic planning with neural guided A* search
Retrosynthetic planning is a critical task in organic chemistry which identifies a series of
reactions that can lead to the synthesis of a target product. The vast number of possible …
reactions that can lead to the synthesis of a target product. The vast number of possible …
Recent advances in deep learning for retrosynthesis
Retrosynthesis is the cornerstone of organic chemistry, providing chemists in material and
drug manufacturing access to poorly available and brand‐new molecules. Conventional rule …
drug manufacturing access to poorly available and brand‐new molecules. Conventional rule …
Re-evaluating retrosynthesis algorithms with syntheseus
Automated Synthesis Planning has recently re-emerged as a research area at the
intersection of chemistry and machine learning. Despite the appearance of steady progress …
intersection of chemistry and machine learning. Despite the appearance of steady progress …
[HTML][HTML] Quantitative interpretation explains machine learning models for chemical reaction prediction and uncovers bias
Organic synthesis remains a major challenge in drug discovery. Although a plethora of
machine learning models have been proposed as solutions in the literature, they suffer from …
machine learning models have been proposed as solutions in the literature, they suffer from …
A deep generative model for molecule optimization via one fragment modification
Molecule optimization is a critical step in drug development to improve the desired
properties of drug candidates through chemical modification. We have developed a novel …
properties of drug candidates through chemical modification. We have developed a novel …
[HTML][HTML] Models matter: The impact of single-step retrosynthesis on synthesis planning
Retrosynthesis consists of breaking down a chemical compound recursively step-by-step
into molecular precursors until a set of commercially available molecules is found with the …
into molecular precursors until a set of commercially available molecules is found with the …