Graph neural networks for automated de novo drug design

J Xiong, Z Xiong, K Chen, H Jiang, M Zheng - Drug discovery today, 2021 - Elsevier
Highlights•GNN has attracted wide attention from the field of designing drug molecules.•The
applications of GNN in molecule scoring, molecule generation and optimization, and …

[HTML][HTML] Artificial intelligence for retrosynthesis prediction

Y Jiang, Y Yu, M Kong, Y Mei, L Yuan, Z Huang… - Engineering, 2023 - Elsevier
In recent years, there has been a dramatic rise in interest in retrosynthesis prediction with
artificial intelligence (AI) techniques. Unlike conventional retrosynthesis prediction …

RetroBioCat as a computer-aided synthesis planning tool for biocatalytic reactions and cascades

W Finnigan, LJ Hepworth, SL Flitsch, NJ Turner - Nature catalysis, 2021 - nature.com
As the enzyme toolbox for biocatalysis has expanded, so has the potential for the
construction of powerful enzymatic cascades for efficient and selective synthesis of target …

Current and future roles of artificial intelligence in medicinal chemistry synthesis

TJ Struble, JC Alvarez, SP Brown, M Chytil… - Journal of medicinal …, 2020 - ACS Publications
Artificial intelligence and machine learning have demonstrated their potential role in
predictive chemistry and synthetic planning of small molecules; there are at least a few …

Retro*: learning retrosynthetic planning with neural guided A* search

B Chen, C Li, H Dai, L Song - International conference on …, 2020 - proceedings.mlr.press
Retrosynthetic planning is a critical task in organic chemistry which identifies a series of
reactions that can lead to the synthesis of a target product. The vast number of possible …

Recent advances in deep learning for retrosynthesis

Z Zhong, J Song, Z Feng, T Liu, L Jia… - Wiley …, 2024 - Wiley Online Library
Retrosynthesis is the cornerstone of organic chemistry, providing chemists in material and
drug manufacturing access to poorly available and brand‐new molecules. Conventional rule …

Re-evaluating retrosynthesis algorithms with syntheseus

K Maziarz, A Tripp, G Liu, M Stanley, S Xie… - Faraday …, 2024 - pubs.rsc.org
Automated Synthesis Planning has recently re-emerged as a research area at the
intersection of chemistry and machine learning. Despite the appearance of steady progress …

[HTML][HTML] Quantitative interpretation explains machine learning models for chemical reaction prediction and uncovers bias

DP Kovács, W McCorkindale, AA Lee - Nature communications, 2021 - nature.com
Organic synthesis remains a major challenge in drug discovery. Although a plethora of
machine learning models have been proposed as solutions in the literature, they suffer from …

A deep generative model for molecule optimization via one fragment modification

Z Chen, MR Min, S Parthasarathy, X Ning - Nature machine intelligence, 2021 - nature.com
Molecule optimization is a critical step in drug development to improve the desired
properties of drug candidates through chemical modification. We have developed a novel …

[HTML][HTML] Models matter: The impact of single-step retrosynthesis on synthesis planning

P Torren-Peraire, AK Hassen, S Genheden… - Digital …, 2024 - pubs.rsc.org
Retrosynthesis consists of breaking down a chemical compound recursively step-by-step
into molecular precursors until a set of commercially available molecules is found with the …